CB304677

Overview
NameCB304677
Unique NameCB304677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5695 contig Csv1_Contig5695:287..867. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304677 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.018e-39
Identity = 81/116 (69.83%), Postives = 94/116 (81.03%), Query Frame = -1
Query:  228 PRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 575
            P++STKFSD+ AFSGPAPERINGRLAMIGFVAA+ VE++KGQ +  QLS GGVAWFLGT         +P F+GVSVESKS   M+SDAE WNGR AM+GLVALA TEFVKG++LV
Sbjct:   81 PKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196          
BLAST of CB304677 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.332e-31
Identity = 65/108 (60.19%), Postives = 85/108 (78.70%), Query Frame = -1
Query:  228 DVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 551
            D+F+F G APERINGR AMIGFVAA+ VEL+ G+DVF+Q+ +GGV WFL T         +P+++G+S E+K++GF  SDAE+WNGRFAM+GLVALA TE+VKG  L+
Sbjct:   90 DLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197          
BLAST of CB304677 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.629e-29
Identity = 65/110 (59.09%), Postives = 79/110 (71.82%), Query Frame = -1
Query:  228 DVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLS--DGGVAWFLGTXXXXXXXXXVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 551
            D  AFSGPAPERINGRLAM+GFVAAL+VE ++G  +  Q+     G+AWFL T         +PL +G SVESKS G  ++DAELWNGRFAM+GLVALA TEF+ G+  V
Sbjct:  120 DALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229          
BLAST of CB304677 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.167e-27
Identity = 63/117 (53.85%), Postives = 77/117 (65.81%), Query Frame = -1
Query:  228 PRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDG-GVAWFLGTXXXXXXXXXVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 575
            P+ ST   D  AFSGPAPERINGRLAM+GFV ALAVE  +G  + +QL  G G AWF  T         VPL +G S E ++   M ++AELWNGRFAM+GLVALA TE + G+  +
Sbjct:   49 PKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITGTPFI 165          
BLAST of CB304677 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.525e-27
Identity = 63/117 (53.85%), Postives = 77/117 (65.81%), Query Frame = -1
Query:  228 PRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDG-GVAWFLGTXXXXXXXXXVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 575
            P+ ST   D  AFSGPAPERINGRLAM+GFV ALAVE  +G  + +QL  G G AWF  T         VPL +G S E ++   M ++AELWNGRFAM+GLVALA TE + G+  +
Sbjct:   54 PKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFI 170          
BLAST of CB304677 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.121e-13
Identity = 51/110 (46.36%), Postives = 61/110 (55.45%), Query Frame = -1
Query:  231 SDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXVPLFKGVSVESKSD--GFMTSDAELWNGRFAMMGLVALAVTEFVKGSTL 554
            ++V  FSG APE INGRLAM+GFVAAL  ELS G+ V  QL D      L T         +P F       K D  G  T DAE+ NGRFAM+G  A+ V E ++G  L
Sbjct:   68 TEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQGIAL 171          
The following BLAST results are available for this feature:
BLAST of CB304677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA1.018e-3969.83Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL1.332e-3160.19Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI5_HORVU3.629e-2959.09High molecular mass early light-inducible protein ... [more]
ELI6_HORVU1.167e-2753.85Low molecular mass early light-inducible protein H... [more]
ELI9_HORVU1.525e-2753.85Low molecular mass early light-inducible protein H... [more]
CBR_DUNBA8.121e-1346.36Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_C12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_C12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304677 ID=CB304677; Name=CB304677; organism=Citrus sinensis; type=EST; length=581bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTACAAAACGGAAAAGGGTG
ATTTATTTAGAGAATTGGCATGGGAAAACAGAGATTTACATACAACACCA
CCATAATTCATACACAATAATTAGCCACGGAAGAAACATGACGTGCGCTT
CAAGTATTAAGAATAGGGTCTTGTTATCATTTCAAGACTCTGCAGTCCGC
ATATCACTGGAAAATTGGACTTAACTAAACAAGGGTACTGCCTTTAACAA
ACTCAGTGACAGCCAAAGCAACAAGACCCATCATAGCGAACCTCCCATTC
CACAACTCAGCATCCGAAGTCATGAACCCATCCGATTTAGACTCCACGCT
GACACCTTTAAACAAAGGAACCAGGGACGCAACCGAAAGCAGAACACTGG
TCCCCAAGAACCAGGCAACTCCACCGTCTGATAACTGGGCAAACACATCC
TGACCCTTGGATAGCTCCACCGCCAATGCAGCCACGAACCCAATCATCGC
AAGCCTCCCGTTTATCCTCTCCGGTGCCGGCCCGCTGAACGCAAACACGT
CAGAGAACTTCGTGCTTATACGCGGTAGCTT
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