CB304687

Overview
NameCB304687
Unique NameCB304687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3817 contig Csv1_Contig3817:1..568. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304687 vs. ExPASy Swiss-Prot
Match: LEGB_GOSHI (Legumin B OS=Gossypium hirsutum GN=LEGB PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.019e-36
Identity = 72/111 (64.86%), Postives = 91/111 (81.98%), Query Frame = -3
Query:  235 IVYVTRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAGNRGLEWISFKTNDVAMTSQLAGRASVLRGLPLDVIQNSFQVSRDEAQRLKYNRQELTVFTPGPRSQ 567
            IVY+TRGNGR+QIV+ENGE +FD Q+  GQ+I VPQ  AVVK+AG RG EWI+FKTN  A  SQ+AGR S++RGLP+DV+ NSF +SR+EA RLK+NRQE++VF+P   SQ
Sbjct:  405 IVYITRGNGRIQIVSENGEAIFDEQVERGQVITVPQNHAVVKKAGRRGFEWIAFKTNANAKISQIAGRVSIMRGLPVDVLANSFGISREEAMRLKHNRQEVSVFSPRQGSQ 515          
BLAST of CB304687 vs. ExPASy Swiss-Prot
Match: 11SB_CUCMA (11S globulin subunit beta OS=Cucurbita maxima PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 8.927e-33
Identity = 64/111 (57.66%), Postives = 90/111 (81.08%), Query Frame = -3
Query:  235 IVYVTRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAGNRGLEWISFKTNDVAMTSQLAGRASVLRGLPLDVIQNSFQVSRDEAQRLKYNRQELTVFTPGPRSQ 567
            ++Y TRGN R+Q+V   G++VFDG++REGQ++++PQ F V+KRA +RG EWI+FKTND A+T+ LAGR S +R LPL V+ N +++SR+EAQRLKY +QE+ V +PG RSQ
Sbjct:  367 VMYATRGNARVQVVDNFGQSVFDGEVREGQVLMIPQNFVVIKRASDRGFEWIAFKTNDNAITNLLAGRVSQMRMLPLGVLSNMYRISREEAQRLKYGQQEMRVLSPG-RSQ 476          
BLAST of CB304687 vs. ExPASy Swiss-Prot
Match: 12S1_ARATH (12S seed storage protein CRA1 OS=Arabidopsis thaliana GN=CRA1 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.021e-28
Identity = 63/111 (56.76%), Postives = 82/111 (73.87%), Query Frame = -3
Query:  238 IVYVTRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAGNRGLEWISFKTNDVAMTSQLAGRASVLRGLPLDVIQNSFQVSRDEAQRLKYNRQELTV-FTPGPRS 567
            I+YVT G  ++QIV +NG  VFDGQ+ +GQLI VPQGF+VVKRA +   +W+ FKTN  A  + LAGR SVLRGLPL+VI N FQ+S +EA+R+K+N  E T+  + GP S
Sbjct:  353 ILYVTDGEAQIQIVNDNGNRVFDGQVSQGQLIAVPQGFSVVKRATSNRFQWVEFKTNANAQINTLAGRTSVLRGLPLEVITNGFQISPEEARRVKFNTLETTLTHSSGPAS 463          
BLAST of CB304687 vs. ExPASy Swiss-Prot
Match: 13S3_FAGES (13S globulin seed storage protein 3 OS=Fagopyrum esculentum GN=FAGAG1 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.334e-28
Identity = 57/105 (54.29%), Postives = 79/105 (75.24%), Query Frame = -3
Query:  250 VYVTRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAGNRGLEWISFKTNDVAMTSQLAGRASVLRGLPLDVIQNSFQVSRDEAQRLKYNRQELTVFTP 564
            +YVTRG GR+Q+V + G +VFD  ++ GQ++VVPQGFAVV +AG  GLEW+  K +D A+TS +AG+ SVLR +P++V+ NS+ +S  EA RLK  RQE+ VF P
Sbjct:  419 LYVTRGEGRVQVVGDEGRSVFDDNVQRGQILVVPQGFAVVLKAGREGLEWVELKNDDNAITSPIAGKTSVLRAIPVEVLANSYDISTKEAFRLKNGRQEVEVFRP 523          
BLAST of CB304687 vs. ExPASy Swiss-Prot
Match: 13S1_FAGES (13S globulin seed storage protein 1 OS=Fagopyrum esculentum GN=FA02 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.334e-28
Identity = 57/105 (54.29%), Postives = 79/105 (75.24%), Query Frame = -3
Query:  250 VYVTRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAGNRGLEWISFKTNDVAMTSQLAGRASVLRGLPLDVIQNSFQVSRDEAQRLKYNRQELTVFTP 564
            +YVTRG GR+Q+V + G +VFD  ++ GQ++VVPQGFAVV +AG  GLEW+  K +D A+TS +AG+ SVLR +P++V+ NS+ +S  EA RLK  RQE+ VF P
Sbjct:  449 LYVTRGEGRVQVVGDEGRSVFDDNVQRGQILVVPQGFAVVLKAGREGLEWVELKNDDNAITSPIAGKTSVLRAIPVEVLANSYDISTKEAFRLKNGRQEVEVFLP 553          
BLAST of CB304687 vs. ExPASy Swiss-Prot
Match: 13SB_FAGES (13S globulin basic chain OS=Fagopyrum esculentum PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.881e-28
Identity = 54/99 (54.55%), Postives = 79/99 (79.80%), Query Frame = -3
Query:  268 VYVTRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAGNRGLEWISFKTNDVAMTSQLAGRASVLRGLPLDVIQNSFQVSRDEAQRLKYNRQE 564
            +YVTRGN ++Q+V + G  VFD ++++GQLI+VPQ FAV+K+AGN+G E+++FKTND AM + L GR S  R +P +V+++SFQ+S +EA+ LKY RQE
Sbjct:   72 LYVTRGNAKVQVVGDEGNKVFDDEVKQGQLIIVPQYFAVIKKAGNQGFEYVAFKTNDNAMINPLVGRLSAFRAIPEEVLRSSFQISSEEAEELKYGRQE 170          
BLAST of CB304687 vs. ExPASy Swiss-Prot
Match: CRUA_BRANA (Cruciferin OS=Brassica napus GN=CRUA PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.620e-28
Identity = 60/114 (52.63%), Postives = 82/114 (71.93%), Query Frame = -3
Query:  229 IVYVTRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAGNRGLEWISFKTNDVAMTSQLAGRASVLRGLPLDVIQNSFQVSRDEAQRLKYNRQELTV-FTPGPRSQWG 567
            ++YVT G   +Q+V +NG+ VFDGQ+ +GQL+ +PQGF+VVKRA +    WI FKTN  A  + LAGR SVLRGLPL+VI N +Q+S +EA+R+K+N  E T+  + GP S  G
Sbjct:  369 VLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLLSIPQGFSVVKRATSEQFRWIEFKTNANAQINTLAGRTSVLRGLPLEVISNGYQISLEEARRVKFNTIETTLTHSSGPASYGG 482          
BLAST of CB304687 vs. ExPASy Swiss-Prot
Match: CRU1_BRANA (Cruciferin BnC1 OS=Brassica napus GN=BnC1 PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 6.620e-28
Identity = 60/114 (52.63%), Postives = 82/114 (71.93%), Query Frame = -3
Query:  229 IVYVTRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAGNRGLEWISFKTNDVAMTSQLAGRASVLRGLPLDVIQNSFQVSRDEAQRLKYNRQELTV-FTPGPRSQWG 567
            ++YVT G   +Q+V +NG+ VFDGQ+ +GQL+ +PQGF+VVKRA +    WI FKTN  A  + LAGR SVLRGLPL+VI N +Q+S +EA+R+K+N  E T+  + GP S  G
Sbjct:  371 VLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLLSIPQGFSVVKRATSEQFRWIEFKTNANAQINTLAGRTSVLRGLPLEVISNGYQISLEEARRVKFNTIETTLTHSSGPASYGG 484          
BLAST of CB304687 vs. ExPASy Swiss-Prot
Match: 13S2_FAGES (13S globulin seed storage protein 2 OS=Fagopyrum esculentum GN=FA18 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 8.646e-28
Identity = 55/105 (52.38%), Postives = 79/105 (75.24%), Query Frame = -3
Query:  250 VYVTRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAGNRGLEWISFKTNDVAMTSQLAGRASVLRGLPLDVIQNSFQVSRDEAQRLKYNRQELTVFTP 564
            +YVTRG GR+Q+V + G++VFD +++ GQ++VVPQGFAVV +AG  GLEW+  K +  A+TS + GR SVLR +P++V+ NS+ +S  EA +LK  RQE+ VF P
Sbjct:  385 LYVTRGEGRVQVVGDEGKSVFDDKVQRGQILVVPQGFAVVLKAGREGLEWVELKNSGNAITSPIGGRTSVLRAIPVEVLANSYDISTKEAYKLKNGRQEVEVFRP 489          
BLAST of CB304687 vs. ExPASy Swiss-Prot
Match: CRU1_RAPSA (Cruciferin PGCRURSE5 OS=Raphanus sativus GN=CRURS PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.475e-27
Identity = 57/103 (55.34%), Postives = 78/103 (75.73%), Query Frame = -3
Query:  259 IVYVTRGNGRMQIVAENGENVFDGQIREGQLIVVPQGFAVVKRAGNRGLEWISFKTNDVAMTSQLAGRASVLRGLPLDVIQNSFQVSRDEAQRLKYNRQELTV 567
            I+Y T+G  R+Q+V +NG+NV D Q+++GQL+V+PQGFA V ++     EWISFKTN  AM S LAGR S LR LPL+VI N+FQ+S +EA+R+K+N  E T+
Sbjct:  360 ILYCTQGQARIQVVNDNGQNVLDQQVQKGQLVVIPQGFAYVVQSHGNNFEWISFKTNANAMVSTLAGRTSALRALPLEVITNAFQISLEEARRIKFNTPETTL 462          
The following BLAST results are available for this feature:
BLAST of CB304687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
LEGB_GOSHI1.019e-3664.86Legumin B OS=Gossypium hirsutum GN=LEGB PE=2 SV=1[more]
11SB_CUCMA8.927e-3357.6611S globulin subunit beta OS=Cucurbita maxima PE=1... [more]
12S1_ARATH1.021e-2856.7612S seed storage protein CRA1 OS=Arabidopsis thali... [more]
13S3_FAGES1.334e-2854.2913S globulin seed storage protein 3 OS=Fagopyrum e... [more]
13S1_FAGES1.334e-2854.2913S globulin seed storage protein 1 OS=Fagopyrum e... [more]
13SB_FAGES3.881e-2854.5513S globulin basic chain OS=Fagopyrum esculentum P... [more]
CRUA_BRANA6.620e-2852.63Cruciferin OS=Brassica napus GN=CRUA PE=1 SV=1[more]
CRU1_BRANA6.620e-2852.63Cruciferin BnC1 OS=Brassica napus GN=BnC1 PE=3 SV=... [more]
13S2_FAGES8.646e-2852.3813S globulin seed storage protein 2 OS=Fagopyrum e... [more]
CRU1_RAPSA1.475e-2755.34Cruciferin PGCRURSE5 OS=Raphanus sativus GN=CRURS ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_D12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_D12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304687 ID=CB304687; Name=CB304687; organism=Citrus sinensis; type=EST; length=569bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTGAACAAAGAAATATTA
CTTTTTATTTTACTCGCACATTAAACTTACATACAGTCCCGCAGCATTCA
TGTCGTTCATGCCCATTAAGGCTTTTATTCATACATAGTCGTCCCTACCT
CAACTACTTACACTACACTACATAGCTTACTTCCTGATTACGTACCCATT
TACATAATTTCTCTTAGGCTACGGTTAAGCCCCACTGTGACCTAGGCCCT
GGAGTAAACACAGTCAGCTCCTGCCTGTTGTACTTCAACCTCTGAGCTTC
ATCCCTCGACACTTGGAACGAGTTCTGGATAACGTCCAACGGAAGTCCTC
TTAACACCGAAGCCCTTCCGGCCAGCTGGCTTGTCATGGCGACGTCGTTT
GTCTTGAATGATATCCACTCCAGTCCACGGTTACCTGCCCTCTTCACCAC
GGCGAAGCCCTGCGGAACAACGATCAGCTGACCCTCCCGGATTTGACCGT
CGAACACATTCTCCCCGTTCTCCGCTACAATTTGCATCCTGCCGTTGCCC
CTTGTTACGTAGACTATGC
back to top