CB304707

Overview
NameCB304707
Unique NameCB304707
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig352 contig Csv1_Contig352:1..598. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304707 vs. ExPASy Swiss-Prot
Match: TPPC5_DICDI (Trafficking protein particle complex subunit 5 OS=Dictyostelium discoideum GN=trappc5 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.288e-21
Identity = 49/82 (59.76%), Postives = 63/82 (76.83%), Query Frame = -2
Query:  349 TEHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRREA 594
            TE +DEYMIS+  ++VN+FIS+PK + + NC AFVAGI+ G+L SA FPA VTAH V VEG++ P+T ILIKF  EV+ R A
Sbjct:  105 TEADDEYMISDNNMVVNKFISLPKHLSSLNCAAFVAGIIEGILCSAEFPARVTAHNVAVEGKRFPKTVILIKFNPEVIERNA 186          
BLAST of CB304707 vs. ExPASy Swiss-Prot
Match: TRS31_SCHPO (Transport protein particle subunit trs31 OS=Schizosaccharomyces pombe GN=trs31 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.180e-15
Identity = 43/84 (51.19%), Postives = 54/84 (64.29%), Query Frame = -2
Query:  340 EHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRREARLG 591
            E  DEYMI +   L+N+FIS+PK+M   NC A++AGI+ G LDSA FP   +AH VP+  Q   RT ILIK    V+ RE  LG
Sbjct:  127 EASDEYMIVDNNPLLNKFISVPKEMNQLNCCAYLAGIIEGFLDSAQFPCKASAHSVPL-SQYPYRTVILIKLDPSVIAREEVLG 209          
BLAST of CB304707 vs. ExPASy Swiss-Prot
Match: TPPC5_PLAFA (Trafficking protein particle complex subunit 5 OS=Plasmodium falciparum PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.180e-15
Identity = 42/76 (55.26%), Postives = 51/76 (67.11%), Query Frame = -2
Query:  352 EYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRRE 579
            EYMI +K +L+N+FI++PKD G  NC AF AGIV G L S+ F A VTAH +  EG     TTI IKF  EV+ RE
Sbjct:  107 EYMICDKNILLNKFINVPKDYGNINCAAFAAGIVEGFLCSSEFQADVTAHTIH-EGDDNYNTTIFIKFYPEVVERE 181          
BLAST of CB304707 vs. ExPASy Swiss-Prot
Match: TPPC5_PLAF7 (Trafficking protein particle complex subunit 5 OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0358 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.180e-15
Identity = 42/76 (55.26%), Postives = 51/76 (67.11%), Query Frame = -2
Query:  352 EYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRRE 579
            EYMI +K +L+N+FI++PKD G  NC AF AGIV G L S+ F A VTAH +  EG     TTI IKF  EV+ RE
Sbjct:  107 EYMICDKNILLNKFINVPKDYGNINCAAFAAGIVEGFLCSSEFQADVTAHTIH-EGDDNYNTTIFIKFYPEVVERE 181          
BLAST of CB304707 vs. ExPASy Swiss-Prot
Match: TPPC5_CHICK (Trafficking protein particle complex subunit 5 OS=Gallus gallus GN=TRAPPC5 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.138e-12
Identity = 37/83 (44.58%), Postives = 52/83 (62.65%), Query Frame = -2
Query:  343 EHEDEYMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRREARL 591
            + +  Y + E+E LVN FIS+P++  T NC AF AG+V  VL ++GFPA VTAH+          TT++IKF E V+ R+  L
Sbjct:  110 DDDKTYYVIEREPLVNTFISVPRENSTLNCAAFTAGLVEAVLGASGFPAKVTAHW-------HKGTTLMIKFEEGVIARDKSL 185          
BLAST of CB304707 vs. ExPASy Swiss-Prot
Match: TPPC5_MOUSE (Trafficking protein particle complex subunit 5 OS=Mus musculus GN=Trappc5 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.378e-12
Identity = 36/78 (46.15%), Postives = 49/78 (62.82%), Query Frame = -2
Query:  343 YMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRREARL 576
            + I E+E L+N +IS+PK+  T NC +F AGIV  VL  +GFPA VTAH+          TT++IKF E V+ R+  L
Sbjct:  115 FYIIEREPLINTYISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHW-------HKGTTLMIKFEEAVIARDRAL 185          
BLAST of CB304707 vs. ExPASy Swiss-Prot
Match: TPPC5_HUMAN (Trafficking protein particle complex subunit 5 OS=Homo sapiens GN=TRAPPC5 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.378e-12
Identity = 36/78 (46.15%), Postives = 49/78 (62.82%), Query Frame = -2
Query:  343 YMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRREARL 576
            + I E+E L+N +IS+PK+  T NC +F AGIV  VL  +GFPA VTAH+          TT++IKF E V+ R+  L
Sbjct:  115 FYIIEREPLINTYISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHW-------HKGTTLMIKFEEAVIARDRAL 185          
BLAST of CB304707 vs. ExPASy Swiss-Prot
Match: TPPC5_BOVIN (Trafficking protein particle complex subunit 5 OS=Bos taurus GN=TRAPPC5 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.378e-12
Identity = 36/78 (46.15%), Postives = 49/78 (62.82%), Query Frame = -2
Query:  343 YMISEKELLVNRFISIPKDMGTFNCGAFVAGIVRGVLDSAGFPAVVTAHFVPVEGQQRPRTTILIKFAEEVLRREARL 576
            + I E+E L+N +IS+PK+  T NC +F AGIV  VL  +GFPA VTAH+          TT++IKF E V+ R+  L
Sbjct:  115 FYIIEREPLINTYISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHW-------HKGTTLMIKFEEAVIARDRAL 185          
The following BLAST results are available for this feature:
BLAST of CB304707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
TPPC5_DICDI2.288e-2159.76Trafficking protein particle complex subunit 5 OS=... [more]
TRS31_SCHPO4.180e-1551.19Transport protein particle subunit trs31 OS=Schizo... [more]
TPPC5_PLAFA4.180e-1555.26Trafficking protein particle complex subunit 5 OS=... [more]
TPPC5_PLAF74.180e-1555.26Trafficking protein particle complex subunit 5 OS=... [more]
TPPC5_CHICK1.138e-1244.58Trafficking protein particle complex subunit 5 OS=... [more]
TPPC5_MOUSE7.378e-1246.15Trafficking protein particle complex subunit 5 OS=... [more]
TPPC5_HUMAN7.378e-1246.15Trafficking protein particle complex subunit 5 OS=... [more]
TPPC5_BOVIN7.378e-1246.15Trafficking protein particle complex subunit 5 OS=... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_G04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_G04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304707 ID=CB304707; Name=CB304707; organism=Citrus sinensis; type=EST; length=598bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGATCAACATATCCTCAGA
TTAAGCAATCCATTTTAGTTCATATGAAACAGTGATGGTAGTGGTAATGA
TTATCACATTTAATTACATCAACGAGAGTGGCAGACTGCTTCTACTTTCA
ATAGTCTACATGCCAATAAGCATAGCGCAGTATTTATACCAGAGAAACAA
GCAGTTCATATTGGCAGAAGTATATAATTGACAGGTCATGAAAAATCCTG
ATTGTTTTGTGAGTCCAGCTACACAGCCTCATCATTCTGTTGCGAAACAT
TCAAACAAATCAAATAGGATAGCTTCAGTGCCAGTATCAGCCCAGCCTTG
CTTCCCTCCGTAGTACCTCTTCAGCAAACTTTATCAAAATGGTTGTCCGA
GGACGCTGTTGTCCCTCAACAGGCACAAAATGTGCTGTTACTACTGCAGG
GAAGCCAGCACTATCCAGAACACCCCTTACTATTCCAGCAACAAATGCCC
CACAATTAAATGTCCCCATATCTTTTGGAATTGAAATAAACCTGTTTACA
AGGAGCTCTTTCTCACTGATCATGTATTCGTCTTCATGTTCAGTTCCT
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