CB304712

Overview
NameCB304712
Unique NameCB304712
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length564
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5593 contig Csv1_Contig5593:36..593. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_GOSHI (60S ribosomal protein L37a OS=Gossypium hirsutum GN=RPL37A PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 5.322e-46
Identity = 89/92 (96.74%), Postives = 91/92 (98.91%), Query Frame = -1
Query:  241 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 516
            MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVS+HSKYFCEFCG+YAVKRKAVGIWGCK CGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Sbjct:    1 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKACGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 92          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_ORYSJ (60S ribosomal protein L37a OS=Oryza sativa subsp. japonica GN=Os01g0679700 PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 6.951e-46
Identity = 87/92 (94.57%), Postives = 92/92 (100.00%), Query Frame = -1
Query:  241 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 516
            MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVS+HSKYFCEFCG++AVKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTE+
Sbjct:    1 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTEA 92          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_PSEMZ (60S ribosomal protein L37a OS=Pseudotsuga menziesii GN=RPL37A PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 5.885e-45
Identity = 86/91 (94.51%), Postives = 90/91 (98.90%), Query Frame = -1
Query:  244 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 516
            MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVS+HSK+FCEFCG++AVKRKAVGIWGCKDCGKVKAGGAYTLNT SAVTVRSTIRRLREQTE
Sbjct:    1 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTLNTPSAVTVRSTIRRLREQTE 91          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: R37A1_ARATH (Putative 60S ribosomal protein L37a-1 OS=Arabidopsis thaliana GN=RPL37AB PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.311e-44
Identity = 85/92 (92.39%), Postives = 90/92 (97.83%), Query Frame = -1
Query:  241 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 516
            MTKRTKKA IVGKYGTRYGASLRKQIKKMEVS+H+KYFCEFCG+Y+VKRK VGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQTES
Sbjct:    1 MTKRTKKARIVGKYGTRYGASLRKQIKKMEVSQHNKYFCEFCGKYSVKRKVVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQTES 92          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: R37A2_ARATH (60S ribosomal protein L37a-2 OS=Arabidopsis thaliana GN=RPL37AC PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 8.497e-44
Identity = 83/91 (91.21%), Postives = 87/91 (95.60%), Query Frame = -1
Query:  244 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 516
            M KRTKK GIVGKYGTRYGAS+RKQIKKMEVS+HSKYFCEFCG+Y VKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRSTIRRLREQ E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSTIRRLREQIE 91          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_BRARA (60S ribosomal protein L37a OS=Brassica rapa GN=RPL37A PE=3 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 2.093e-42
Identity = 83/92 (90.22%), Postives = 87/92 (94.57%), Query Frame = -1
Query:  244 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRS-TIRRLREQTE 516
            M KRTKK GIVGKYGTRYGAS+RKQIKKMEVS+HSKYFCEFCG+Y VKRKAVGIWGCKDCGKVKAGGAYT+NTASAVTVRS TIRRLREQ E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASIRKQIKKMEVSQHSKYFCEFCGKYGVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVRSHTIRRLREQIE 92          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_OSTLU (60S ribosomal protein L37a OS=Ostreococcus lucimarinus (strain CCE9901) GN=RPL37a PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.458e-37
Identity = 71/91 (78.02%), Postives = 79/91 (86.81%), Query Frame = -1
Query:  244 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 516
            M KRTKK GIVGKYGTRYGASLRK +KK EVS+HSK+FC+FCG+Y +KRKAVGIW CK C K KAGGAY+LNT  +VTVRSTIRRLRE TE
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKVVKKQEVSQHSKFFCDFCGKYGMKRKAVGIWSCKGCNKTKAGGAYSLNTGGSVTVRSTIRRLREATE 91          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_OSTTA (60S ribosomal protein L37a OS=Ostreococcus tauri GN=RPL37a PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 2.927e-36
Identity = 70/91 (76.92%), Postives = 79/91 (86.81%), Query Frame = -1
Query:  244 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 516
            M KRTKK GIVGKYGTRYGASLRK +KK EVS+HSK+FC+FCG+Y +KR+AVGIW CK C K KAGGAY+LNT  +VTVRSTIRRLRE TE
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKVVKKTEVSQHSKFFCDFCGKYGMKRQAVGIWCCKGCNKTKAGGAYSLNTGGSVTVRSTIRRLREATE 91          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_CRYST (60S ribosomal protein L37a OS=Cryptochiton stelleri GN=RPL37A PE=3 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 1.041e-33
Identity = 66/92 (71.74%), Postives = 78/92 (84.78%), Query Frame = -1
Query:  241 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 516
            M KRTKK GIVGKYGTRYGASLRK +KKME+++HSKY C+FCG+ A+KR+AVGIWGCK C KV AGGA+  +T +AVTVRS +RRLRE  ES
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKTVKKMEITQHSKYTCQFCGKDAMKRQAVGIWGCKSCRKVVAGGAWVYSTMAAVTVRSAVRRLREMKES 92          
BLAST of CB304712 vs. ExPASy Swiss-Prot
Match: RL37A_DICDI (60S ribosomal protein L37a OS=Dictyostelium discoideum GN=rpl37A PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.703e-31
Identity = 61/88 (69.32%), Postives = 73/88 (82.95%), Query Frame = -1
Query:  253 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSRHSKYFCEFCGEYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 516
            M KRTKK G+VGKYGTRYGASLRKQ+KKME+++H  Y C FCG+ AV+R +VGIW C  C KV AGGA+T++TA+  TVRSTIRRLRE
Sbjct:    1 MAKRTKKVGVVGKYGTRYGASLRKQVKKMEITQHGTYTCSFCGKDAVRRSSVGIWKCNGCRKVLAGGAWTMSTAAGATVRSTIRRLRE 88          
The following BLAST results are available for this feature:
BLAST of CB304712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RL37A_GOSHI5.322e-4696.7460S ribosomal protein L37a OS=Gossypium hirsutum G... [more]
RL37A_ORYSJ6.951e-4694.5760S ribosomal protein L37a OS=Oryza sativa subsp. ... [more]
RL37A_PSEMZ5.885e-4594.5160S ribosomal protein L37a OS=Pseudotsuga menziesi... [more]
R37A1_ARATH1.311e-4492.39Putative 60S ribosomal protein L37a-1 OS=Arabidops... [more]
R37A2_ARATH8.497e-4491.2160S ribosomal protein L37a-2 OS=Arabidopsis thalia... [more]
RL37A_BRARA2.093e-4290.2260S ribosomal protein L37a OS=Brassica rapa GN=RPL... [more]
RL37A_OSTLU3.458e-3778.0260S ribosomal protein L37a OS=Ostreococcus lucimar... [more]
RL37A_OSTTA2.927e-3676.9260S ribosomal protein L37a OS=Ostreococcus tauri G... [more]
RL37A_CRYST1.041e-3371.7460S ribosomal protein L37a OS=Cryptochiton steller... [more]
RL37A_DICDI3.703e-3169.3260S ribosomal protein L37a OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_G10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_G10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304712 ID=CB304712; Name=CB304712; organism=Citrus sinensis; type=EST; length=564bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTAGGAAAACCCACTAGAT
AACATAATTTCATAGGAAAAATAGCGAATGAACGTCTCAAGAGTCAAAAC
ACAGCCAAAAGTTTCATGTTCCAACAACCAATTGTTTTGCATCTAGAAAT
AAAGCAACATCAAAAATGATTTAAGGTTGTATCCGAAACTAAAGATCAAA
CGACCTAAGACACGGGAGTAAGCCAATGGTGGCAAGCTCAGCTTTCAGTT
TGCTCCCTCAACCTACGGATTGTGCTCCTCACAGTCACAGCACTAGCAGT
GTTCAAAGTGTAGGCACCGCCTGCCTTGACTTTCCCACAGTCCTTGCAGC
CCCAAATGCCAACAGCTTTCCTCTTCACCGCATACTCCCCGCAAAATTCG
CAGAAATATTTGCTATGCCGACTAACCTCCATCTTCTTAATTTGCTTCCT
CAAACTGGCACCATAACGGGTACCATACTTTCCAACGATTCCAGCCTTCT
TCGTACGCTTGGTCATTGTGGCGTTGGAGCGAAGGTCTGTAGCTCTTCAA
CAAGCAGCGGCTGT
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