CB304714

Overview
NameCB304714
Unique NameCB304714
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length492
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8859 contig Csv1_Contig8859:418..909. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304714 vs. ExPASy Swiss-Prot
Match: Y1815_ARATH (UPF0426 protein At1g28150, chloroplastic OS=Arabidopsis thaliana GN=At1g28150 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.248e-20
Identity = 47/61 (77.05%), Postives = 55/61 (90.16%), Query Frame = -1 
Query:  175 ACFPSPIDEPILKEALKEPVAFVGGMFAGLLRLDLNDDPLKDWVTRTVEAAGITEEEIKAE 357
            +CF  P  EPIL EALKEP+AF+GGMFAGLLRLDLN++PLKDWVTRTVEA+GITEEE+ A+
Sbjct:   48 SCFNLP-QEPILSEALKEPIAFLGGMFAGLLRLDLNEEPLKDWVTRTVEASGITEEEVDAD 107
The following BLAST results are available for this feature:
BLAST of CB304714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1815_ARATH1.248e-2077.05UPF0426 protein At1g28150, chloroplastic OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIIaR_G12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIIaR_G12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304714 ID=CB304714; Name=CB304714; organism=Citrus sinensis; type=EST; length=492bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTCTCAATGATTTTTATTT
ATTCAGTACGTTAATGTATAGTTGCAATGACCGAATGCAGATAGATAAAT
ATGAAACAGGGAGGACCAAAATCTCATCATTCAATCTCTATCTGTTCTGG
AACTTCTTCATCGGATTTTGAGTCTTCAGCTTTGATTTCTTCTTCTGTAA
TTCCAGCGGCTTCCACTGTTCTTGTAACCCAGTCCTTCAGTGGATCATCG
TTCAAATCAAGCCTTAAAAGACCGGCAAACATGCCGCCCACGAAGGCAAC
CGGCTCCTTAAGAGCTTCTTTGAGGATGGGTTCATCGATGGGACTGGGGA
AACACGCTCTCACACCATTTTTGTTTCTATAATTATTACTCCTTAATCTT
AAACTAGAACAACTGCTGCGTTTAAGCAATAATGATGATGGCGGTGGAAA
TGAGTTTTGTCTTGGATTCCTTATTTGATACAGTGTACATGA
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