CB304724

Overview
NameCB304724
Unique NameCB304724
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304724_ssr187 microsatellite CB304724_ssr187:187..198. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:81..663. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.303e-34
Identity = 64/111 (57.66%), Postives = 86/111 (77.48%), Query Frame = -1
Query:  251 KLVCALLLCILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDCFRVR 583
            KL   + LC++V+ P+  AITCGQV+++LAPCIP++R GG  PP  CC+G+R++N  ARTTPDRQAACNCLK+   ++ G+ PN AAALP +CGV IPY+ISPS +C  V+
Sbjct:    8 KLALVVALCMVVSVPIAQAITCGQVSSNLAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 8.448e-34
Identity = 66/110 (60.00%), Postives = 84/110 (76.36%), Query Frame = -1
Query:  251 LVCALLLCILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDCFRVR 580
            ++CA + C++V AP T A++CGQV++SLAPCI +L  GG  PP  CCSGV+SLN AA+TTPDRQAAC CLK AY +I G+    AA+ P +CGV IPYKISPS DC +V+
Sbjct:    8 VLCAGVTCMVVGAPYTEALSCGQVSSSLAPCISYLTKGGAVPPA-CCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.761e-31
Identity = 64/111 (57.66%), Postives = 82/111 (73.87%), Query Frame = -1
Query:  251 KLVCALLLCILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDCFRVR 583
            KL   + LC+ V+  V +AITCGQVT+SLAPCI ++R+GG  PP  CC+G+R++NG ARTT DRQ ACNCLK   G+I G+ PN AA LP +CGV +PYKIS S +C  V+
Sbjct:    8 KLALVVALCMAVS--VAHAITCGQVTSSLAPCIGYVRSGGAVPPA-CCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.924e-31
Identity = 58/111 (52.25%), Postives = 82/111 (73.87%), Query Frame = -1
Query:  251 KLVCALLLCILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDCFRVR 583
            KL   + LC++V+ P+  A+TCGQV+++LAPCI ++R GG  PP  CC+G+R++N  A+TT DRQ ACNCLK+   ++ G+  N AAALP +CGV +PYKISPS +C  V+
Sbjct:    8 KLALVVALCMVVSVPIAQALTCGQVSSNLAPCIAYVRGGGAVPPA-CCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.947e-30
Identity = 64/111 (57.66%), Postives = 78/111 (70.27%), Query Frame = -1
Query:  251 KLVCALLLCILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDCFRVR 583
            K+ C ++LC++V AP   AITCGQVT++LAPC+ +LR  G  P   CC GV++L  +ARTT DRQ AC CLK A G I GI    AA LPS CGV IPYKISPS DC +V+
Sbjct:    6 KIACFVVLCMVVAAPCAEAITCGQVTSNLAPCLAYLRNTG--PLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.339e-30
Identity = 63/111 (56.76%), Postives = 79/111 (71.17%), Query Frame = -1
Query:  251 KLVCALLLCILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDCFRVR 583
            K+ C +LLC++V AP   A+TCGQVTA LAPC+P+L+  GR P   CC GV++L G+A+TT DR+ AC CLK A   I+GI  N AA +PS C V IPYKISPS DC  V+
Sbjct:    6 KIACFVLLCMVVVAPHAEALTCGQVTAGLAPCLPYLQ--GRGPLGGCCGGVKNLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.666e-30
Identity = 63/111 (56.76%), Postives = 78/111 (70.27%), Query Frame = -1
Query:  251 KLVCALLLCILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDCFRVR 583
            K+ C +LLC++V AP   A+TCGQVTA LAPC+P+L+  GR P   CC GV+ L G+A+TT DR+ AC CLK A   I+GI  N AA +PS C V IPYKISPS DC  V+
Sbjct:    6 KIACFVLLCMVVVAPHAEALTCGQVTAGLAPCLPYLQ--GRGPLGGCCGGVKGLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 9.665e-30
Identity = 59/111 (53.15%), Postives = 82/111 (73.87%), Query Frame = -1
Query:  251 KLVCALLLCILVTAPVTNAITCGQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDCFRVR 583
            KL   + LC+ V+  V +AITC QV+A+LAPCI ++R+GG  PP  CC+G++++NG A+TTPDRQAACNCLK   G++ G+ P  A +LP +CGV +PYKIS S +C  V+
Sbjct:    8 KLALVVALCMAVS--VAHAITCSQVSANLAPCINYVRSGGAVPPA-CCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.153e-29
Identity = 64/113 (56.64%), Postives = 81/113 (71.68%), Query Frame = -1
Query:  251 KLVCALLLCILVTAPVTN-AITCGQVTASLAPCIPFLR-TGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDCFRVR 583
            KL C ++LC++V AP+   A+T GQVT SLAPCI +LR +G    PP CC+G++SLN AA+TTP RQAAC C+K A   I GI   +A+ LP +CGV IPYKISPS DC  V+
Sbjct:    8 KLACVVVLCMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          
BLAST of CB304724 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.153e-29
Identity = 64/113 (56.64%), Postives = 81/113 (71.68%), Query Frame = -1
Query:  251 KLVCALLLCILVTAPVTN-AITCGQVTASLAPCIPFLR-TGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAALPSQCGVRIPYKISPSPDCFRVR 583
            KL C ++LC++V AP+   A+T GQVT SLAPCI +LR +G    PP CC+G++SLN AA+TTP RQAAC C+K A   I GI   +A+ LP +CGV IPYKISPS DC  V+
Sbjct:    4 KLACVVVLCMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          
The following BLAST results are available for this feature:
BLAST of CB304724 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
NLTP1_PRUDU1.303e-3457.66Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_HELAN8.448e-3460.00Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP_MALDO1.761e-3157.66Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP_PRUAV3.924e-3152.25Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP1_TOBAC1.947e-3057.66Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP1_SOLLC4.339e-3056.76Non-specific lipid-transfer protein 1 OS=Solanum l... [more]
NLTP1_SOLPN5.666e-3056.76Non-specific lipid-transfer protein 1 OS=Solanum p... [more]
NLTP_PYRCO9.665e-3053.15Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP2_GOSHI2.153e-2956.64Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_GOSHI2.153e-2956.64Non-specific lipid-transfer protein OS=Gossypium h... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_A02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_A02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304724 ID=CB304724; Name=CB304724; organism=Citrus sinensis; type=EST; length=583bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGATAATACCACAAAATAAC
TATAATTAATCACTCAAAACACAGATCGCGTTTACATATTTAATATGACA
TAAAAAGCAAATATACAAACATGACATGAGAGTGAAACTCATACAAGGGG
AGACTCGTTCGGACAAAGAAATTAACATAAATATTCTTTATTTATTTATT
CTTCTCAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTCA
CCTGACCCTAAAGCAGTCGGGGCTGGGGCTGATCTTGTAAGGAATTCTGA
CTCCACATTGACTAGGAAGGGCAGCGGCAACATTAGGTTTGATGCCGCGG
ATTGTTCCGTAAGCTCGTTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGG
GGTGGTTCTGGCGGCGCCGTTGAGAGACCTGACGCCGCTACAGCATGGCG
GGGGAGGAAAACGCCCTCCAGTTCTCAAGAAAGGGATGCATGGAGCCAAG
GAGGCTGTCACCTGCCCGCATGTTATGGCATTAGTCACCGGGGCAGTCAC
CAGAATGCACAAAAGCAAAGCACAAACAAGCTT
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