CB304728

Overview
NameCB304728
Unique NameCB304728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length391
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9435 contig Csv1_Contig9435:220..610. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPI2_SYNY3 (Peptidyl-prolyl cis-trans isomerase slr1251 OS=Synechocystis sp. (strain PCC 6803) GN=slr1251 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.481e-22
Identity = 53/102 (51.96%), Postives = 72/102 (70.59%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDF + +GT  ESIY  KF DE+ +LKHDRPGLLSM+ A  +T GSQF +TF     LD K+VVFGE+V+G EIL+++E  G + G+    + I +CGE+
Sbjct:   69 QGGDFTRGNGTGGESIYGEKFADENFQLKHDRPGLLSMANAGPNTNGSQFFLTFVPCPWLDGKHVVFGEVVEGLEILEQLEANGSQSGQTKQAIVISDCGEI 170          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPID_ASPFU (Peptidyl-prolyl cis-trans isomerase D OS=Aspergillus fumigatus GN=cpr6 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.527e-22
Identity = 53/103 (51.46%), Postives = 69/103 (66.99%), Query Frame = -3
Query:   36 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEVS 344
            +GGDF   +GT  ESIY  KFPDE+  LKHDRP LLSM+ +   T GSQF IT      LD K+VVFGE++ G  I++KIEN+  +  + T  V I++CGE+S
Sbjct:   78 QGGDFTNFNGTGGESIYGEKFPDENFELKHDRPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSIVRKIENMPTQADKPTTDVTIVDCGELS 180          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: CYPH_YEAST (Peptidyl-prolyl cis-trans isomerase OS=Saccharomyces cerevisiae GN=CPR1 PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 6.111e-21
Identity = 50/102 (49.02%), Postives = 68/102 (66.67%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDF   +GT  +SIY GKFPDE+ +  HDRPGLLSM+ A  +T GSQF IT      LD K+VVFGE+V G++I+KK+E++G   G     + +   GE+
Sbjct:   61 QGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVVDGYDIVKKVESLGSPSGATKARIVVAKSGEL 162          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: CYPH_SCHPO (Peptidyl-prolyl cis-trans isomerase OS=Schizosaccharomyces pombe GN=ppi1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.111e-21
Identity = 49/102 (48.04%), Postives = 68/102 (66.67%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDF + +GT  +SIY  KFPDE+  LKH++PGLLSM+ A  +T GSQF IT      LD K+VVFGE+ +G +++KK+E++G   G     + I  CG V
Sbjct:   61 QGGDFTRGNGTGGKSIYGEKFPDENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKHVVFGEVTEGMDVVKKVESLGSNSGATRARIVIDKCGTV 162          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPID_EMENI (Peptidyl-prolyl cis-trans isomerase D OS=Emericella nidulans GN=cpr6 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.981e-21
Identity = 51/103 (49.51%), Postives = 67/103 (65.05%), Query Frame = -3
Query:   36 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEVS 344
            +GGDF   +GT  ESIY  KFPDE+  LKHDRP LLSM+ +   T GSQF IT      LD K+VVFGE++ G  +++KIEN+  +  + T  V I  CGE++
Sbjct:   73 QGGDFTAFNGTGGESIYGEKFPDENFELKHDRPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSVVRKIENMPTQADKPTTDVTIAECGELT 175          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: CP19B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Arabidopsis thaliana GN=CYP19-2 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.361e-20
Identity = 50/103 (48.54%), Postives = 67/103 (65.05%), Query Frame = -3
Query:   36 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEVS 344
            +GGDF K +GT  ESIY  KF DE+   KH  PG+LSM+ A  +T GSQF I       LD K+VVFG++V+G +++K IE +G   G+ T  V I +CGE+S
Sbjct:   71 QGGDFTKGNGTGGESIYGAKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKIGSSSGKPTKPVVIADCGEIS 173          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIB_DICDI (Peptidyl-prolyl cis-trans isomerase B OS=Dictyostelium discoideum GN=cypB PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.778e-20
Identity = 48/102 (47.06%), Postives = 69/102 (67.65%), Query Frame = -3
Query:   39 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEV 344
            +GGDF + DGT  ESIY  KF DE+ ++KH +PGLLSM+ A  +T GSQF IT      LD ++ VFGE+++G +I+K +E++G + G  +   KI N GE+
Sbjct:   96 QGGDFTRGDGTGGESIYGKKFNDENFKIKHSKPGLLSMANAGPNTNGSQFFITTVVTSWLDGRHTVFGEVIEGMDIVKLLESIGSQSGTPSKIAKISNSGEL 197          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIB_ASPFU (Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus fumigatus GN=cpr2 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.778e-20
Identity = 50/106 (47.17%), Postives = 74/106 (69.81%), Query Frame = -3
Query:   30 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEG-RLTVTVKIINCGEVSED 344
            +GGDF + DGT  +SIY  KF DE+ +L+H R GLLSM+ A +DT GSQF IT      LD ++VVFGE+++G+E++++IENV    G +   TVKI+  G++ ++
Sbjct:   95 QGGDFTRGDGTGGKSIYGEKFADENFKLRHTRKGLLSMANAGKDTNGSQFFITTVPTPWLDGRHVVFGEVLEGYEVVEQIENVPKGPGDKPAETVKIVKSGQIKDE 200          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPID_ASPOR (Peptidyl-prolyl cis-trans isomerase D OS=Aspergillus oryzae GN=cpr6 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.033e-20
Identity = 48/103 (46.60%), Postives = 67/103 (65.05%), Query Frame = -3
Query:   36 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENVGDEEGRLTVTVKIINCGEVS 344
            +GGDF   +GT  ESIY  KFPDE+  LKHD+P LLSM+ +   T GSQF IT      LD K+VVFGE++ G  +++K+EN+  +  +    V I+ CGE++
Sbjct:   72 QGGDFTAFNGTGGESIYGEKFPDENFELKHDKPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSVVRKVENMNTQADKPVKDVTIVECGELT 174          
BLAST of CB304728 vs. ExPASy Swiss-Prot
Match: PPIB_ASPNG (Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus niger GN=cypB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.033e-20
Identity = 55/107 (51.40%), Postives = 73/107 (68.22%), Query Frame = -3
Query:   30 KGGDFVKRDGTSEESIYEGKFPDESPRLKHDRPGLLSMSIADRDTLGSQFIITFKANHSLDRKYVVFGELVQGHEILKKIENV-GDEEGRLTVTVKIINCGEV-SED 344
            +GGDF + DGT  +SIY  KF DE+ +L+H R GLLSM+ A +DT GSQF IT      LD ++VVFGE+++G+EI+ +IENV      R   TVKI+  GE+ SED
Sbjct:   94 QGGDFTRGDGTGGKSIYGEKFADENFKLRHTRKGLLSMANAGKDTNGSQFFITTVPTPWLDGRHVVFGEVLEGYEIVAQIENVPKGRSDRPVETVKIVKSGELESED 200          
The following BLAST results are available for this feature:
BLAST of CB304728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
PPI2_SYNY32.481e-2251.96Peptidyl-prolyl cis-trans isomerase slr1251 OS=Syn... [more]
PPID_ASPFU5.527e-2251.46Peptidyl-prolyl cis-trans isomerase D OS=Aspergill... [more]
CYPH_YEAST6.111e-2149.02Peptidyl-prolyl cis-trans isomerase OS=Saccharomyc... [more]
CYPH_SCHPO6.111e-2148.04Peptidyl-prolyl cis-trans isomerase OS=Schizosacch... [more]
PPID_EMENI7.981e-2149.51Peptidyl-prolyl cis-trans isomerase D OS=Emericell... [more]
CP19B_ARATH1.361e-2048.54Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Ara... [more]
PPIB_DICDI1.778e-2047.06Peptidyl-prolyl cis-trans isomerase B OS=Dictyoste... [more]
PPIB_ASPFU1.778e-2047.17Peptidyl-prolyl cis-trans isomerase B OS=Aspergill... [more]
PPID_ASPOR3.033e-2046.60Peptidyl-prolyl cis-trans isomerase D OS=Aspergill... [more]
PPIB_ASPNG3.033e-2051.40Peptidyl-prolyl cis-trans isomerase B OS=Aspergill... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_A06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_A06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304728 ID=CB304728; Name=CB304728; organism=Citrus sinensis; type=EST; length=391bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCCTCGCTAACTTCACCACA
ATTGATTATCTTCACTGTTACAGTAAGTCTCCCTTCTTCATCGCCAACAT
TTTCAATTTTTTTCAGTATCTCGTGTCCTTGCACAAGCTCCCCAAAAACT
ACATACTTCCTGTCAAGACTATGATTAGCCTTAAAGGTGATGATGAACTG
AGAACCTAGTGTGTCACGATCAGCAATAGACATGGATAAAAGGCCAGGTC
TATCATGTTTTAGCCTCGGTGACTCATCAGGAAATTTCCCCTCATAAATG
CTTTCTTCACTAGTCCCATCTCTTTTTACGAAGTCACCGCCCTTAAAACT
ACATCACAAGAAAAGCAGTCGTGACCATCAGCCCTGTGTCC
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