CB304743

Overview
NameCB304743
Unique NameCB304743
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length429
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304743 vs. ExPASy Swiss-Prot
Match: PRR2_TOBAC (Pathogenesis-related protein R minor form OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.567e-14
Identity = 35/61 (57.38%), Postives = 42/61 (68.85%), Query Frame = -3
Query:  173 YSFTFINAFTFNIQNNCAYTVWAAASPGGGKQLEPKSSWTTDVNPGSNKPARIWARTKCTF 355
            Y     +A TF+I N C YTVWAAASPGGG+QL    SW+ +VNPG+ + ARIW RT C F
Sbjct:   18 YFVAVTHAATFDIVNQCTYTVWAAASPGGGRQLNSGQSWSINVNPGTVQ-ARIWGRTNCNF 77          
BLAST of CB304743 vs. ExPASy Swiss-Prot
Match: PRR1_TOBAC (Pathogenesis-related protein R major form OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.291e-13
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = -3
Query:  173 YSFTFINAFTFNIQNNCAYTVWAAASPGGGKQLEPKSSWTTDVNPGSNKPARIWARTKCTF 355
            Y     +A TF+I N C YTVWAAASPGGG++L+   SW+ +VNPG+ + ARIW RT C F
Sbjct:   18 YFVAVTHAATFDIVNKCTYTVWAAASPGGGRRLDSGQSWSINVNPGTVQ-ARIWGRTNCNF 77          
BLAST of CB304743 vs. ExPASy Swiss-Prot
Match: OSL3_ARATH (Osmotin-like protein OSM34 OS=Arabidopsis thaliana GN=OSM34 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.756e-13
Identity = 36/66 (54.55%), Postives = 43/66 (65.15%), Query Frame = -3
Query:  164 ALYSFTFINAFTFNIQNNCAYTVWAAASPGGGKQLEPKSSWTTDVNPGSNKPARIWARTKCTFGSA 361
            AL   +   A TF I N C+YTVWAAASPGGG++L+   SW  DV  G+ K ARIW RT C F S+
Sbjct:   13 ALLLISTATAATFEILNQCSYTVWAAASPGGGRRLDAGQSWRLDVAAGT-KMARIWGRTNCNFDSS 77          
BLAST of CB304743 vs. ExPASy Swiss-Prot
Match: TLP_ACTDE (Thaumatin-like protein OS=Actinidia deliciosa GN=tlp PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.179e-12
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = -3
Query:  164 YSFTFINAFTFNIQNNCAYTVWAAASPGGGKQLEPKSSWTTDVNPGS-NKPARIWARTKCTFGSA 355
            + FT     TFNI NNC +TVWAAA PGGGK+L+   +W   +NPG+  K AR+W RT C F  A
Sbjct:   17 FLFTCARGATFNIINNCPFTVWAAAVPGGGKRLDRGQNWI--INPGAGTKGARVWPRTGCNFDGA 79          
The following BLAST results are available for this feature:
BLAST of CB304743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PRR2_TOBAC7.567e-1457.38Pathogenesis-related protein R minor form OS=Nicot... [more]
PRR1_TOBAC1.291e-1355.74Pathogenesis-related protein R major form OS=Nicot... [more]
OSL3_ARATH3.756e-1354.55Osmotin-like protein OSM34 OS=Arabidopsis thaliana... [more]
TLP_ACTDE3.179e-1252.31Thaumatin-like protein OS=Actinidia deliciosa GN=t... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_C03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_C03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304743 ID=CB304743; Name=CB304743; organism=Citrus sinensis; type=EST; length=429bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTTTGGCTTAAAAAGTAAT
TATATTACATTGATAGTACGAATAGAACTCTACTACGATGCCACACAAAA
GTTAACTATATATGTAAATGCTACTAAATTTTATTTGCCTTAAGGACAGA
ACACTACCTTGCAGGCGCTGCCGAATGTGCACTTGGTTCGAGCCCATATG
CGAGCTGGCTTATTGCTTCCGGGATTCACATCAGTAGTCCAGGATGATTT
CGGTTCCAGCTGCTTGCCCCCGCCGGGTGAGGCTGCGGCCCAGACAGTGT
AGGCGCAGTTGTTTTGGATGTTAAAGGTGAATGCATTGATGAAGGTGAAG
GAGTAGAGAGCAATCTGGAGAATTATGAAGGGTAATTAAAGGAATGGCTT
TAAAGTTGATGAAGCTCATGCTGCTTCCC
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