CB304749

Overview
NameCB304749
Unique NameCB304749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length567
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 4.663e-42
Identity = 79/112 (70.54%), Postives = 94/112 (83.93%), Query Frame = -3
Query:  227 LEAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 562
            + AEEGQVI CHTVE+WNEQLQKG   K LIVVDFTASWC PC+ ++P L+ELAKKLP V FLKVDVDELK+VA EWAVE+MPTF+  KEGK+++++VGAKK ELQ  + KH
Sbjct:    1 MAAEEGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKH 112          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.500e-40
Identity = 73/112 (65.18%), Postives = 94/112 (83.93%), Query Frame = -3
Query:  227 LEAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 562
            + +EEGQVI+CHTVE+WNEQLQK   +K L+VVDFTASWC PC+ ++P  ++LAKKLP V+FLKVD DELKSVA +WA++AMPTF+  KEGK+L+++VGAKK ELQ  + KH
Sbjct:    1 MASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKH 112          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.341e-40
Identity = 77/110 (70.00%), Postives = 91/110 (82.73%), Query Frame = -3
Query:  227 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 556
            AEEGQVI  HTV++WNE LQKGI  KKLIVVDFTASWC PCK ++   +ELAKK+P V FLKVDVDELKSVA +WAVEAMPTF+  KEGK+++++VGAKK ELQ  + KH
Sbjct:    2 AEEGQVIGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKH 111          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.166e-39
Identity = 72/110 (65.45%), Postives = 91/110 (82.73%), Query Frame = -3
Query:  227 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 556
            +EEGQV  CH VE WNE  +KG+  KKL+VVDFTASWC PC+ ++PIL+++AKK+P VIFLKVDVDELK+V+ EW+VEAMPTFV  K+GK ++R+VGAKK ELQ  + KH
Sbjct:    9 SEEGQVFGCHKVEEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKH 118          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 9.417e-35
Identity = 69/110 (62.73%), Postives = 87/110 (79.09%), Query Frame = -3
Query:  227 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 556
            AEE QVI+CHTV+ WNE+ QK   + KLIV+DFTASWC PC++++P +SELAKK P V F KVDVD+LK VAEE+ VEAMP+FV+ KEG+ +ERIVGA+K EL   +  H
Sbjct:    2 AEEAQVIACHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPHVAFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKIAVH 111          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.673e-34
Identity = 62/110 (56.36%), Postives = 88/110 (80.00%), Query Frame = -3
Query:  227 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 556
            A EG+VI+CHT+E WNE+++    +KKLIV+DFTASWCPPC+ ++P+ +E+AKK   V+F K+DVDEL++VA+E+ VEAMPTFV  KEG +++R+VGA K E+   + KH
Sbjct:    2 AGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKH 111          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 3.956e-33
Identity = 66/113 (58.41%), Postives = 88/113 (77.88%), Query Frame = -3
Query:  227 LEAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKK-LPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 562
            + AEEGQVI CHT + W  QL K   + KLIV+DFTASWCPPC++++PI ++LAKK + + IF KVDVDEL+SVA+E+ VEAMPTFV  K G+V++++VGA K +LQ  + KH
Sbjct:    1 MAAEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKH 113          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: TRXH3_ARATH (Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.167e-33
Identity = 63/110 (57.27%), Postives = 86/110 (78.18%), Query Frame = -3
Query:  227 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 556
            A EG+VI+CHTVE W E+L+    +KKLIV+DFTA+WCPPC+ ++P+ ++LAKK   V+F KVDVDEL +VAEE+ V+AMPTF+  KEG++ E +VGA K E+   +EKH
Sbjct:    2 AAEGEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLDVVFFKVDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKH 111          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 140.198 bits (352), Expect = 6.748e-33
Identity = 64/107 (59.81%), Postives = 85/107 (79.44%), Query Frame = -3
Query:  227 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 547
            G+VIS H++E W  Q+++  AAKKL+V+DFTASWC PC++M+PI ++LAKK PA +FLKVDVDELK +AE+++VEAMPTF+  KEG V +R+VGA K EL   V  H
Sbjct:   18 GEVISVHSLEQWTMQIEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAKKFPAAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTTKVGLH 124          
BLAST of CB304749 vs. ExPASy Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.503e-32
Identity = 62/113 (54.87%), Postives = 88/113 (77.88%), Query Frame = -3
Query:  227 LEAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKK-LPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKGELQLAVEKH 562
            + AEEGQVI CH ++ W  QL     + KLIV+DFTASWCPPC++++P+ ++LAKK + + IF KVDVDEL++VA+E+ VEAMPTFVL K+G V++++VGA+K +L   + KH
Sbjct:    1 MAAEEGQVIGCHEIDVWAVQLDTAKQSNKLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAIFFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDLHATIAKH 113          
The following BLAST results are available for this feature:
BLAST of CB304749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
TRXH_RICCO4.663e-4270.54Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH1_ARATH1.500e-4065.18Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_TOBAC3.341e-4070.00Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH1_TOBAC2.166e-3965.45Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH_FAGES9.417e-3562.73Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRXH5_ARATH4.673e-3456.36Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TRXH4_ARATH3.956e-3358.41Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]
TRXH3_ARATH5.167e-3357.27Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_WHEAT6.748e-3359.81Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]
TRXH2_BRANA1.503e-3254.87Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_C11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_C11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304749 ID=CB304749; Name=CB304749; organism=Citrus sinensis; type=EST; length=567bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGACGAAATAAACTTTCAGAC
GCCAAAGACGGTGTGCTAGAAGATTGTCATTTATTCGTATATACAGGCCT
GTTAAACATGGTACCATATTCTTACATTAAGCAACCACAAACACACACCT
TACAATAAAAGACCAATGAGATTCATGTACGCATCAATCAAGCATTAGCA
GTAGTTGCATTCTCAACAGTTGTTGCGTGCTTTTCGACAGCCAGCTGCAG
CTCACCTTTCTTCGCTCCCACAATCCTCTCCAGGACTTTGCCTTCTTTCG
TCAGTACAAAGGTCGGCATGGCTTCCACAGCCCATTCCTCAGCGACGGAC
TTCAATTCATCAACATCCACCTTCAAGAATATGACAGCGGGCAGCTTCTT
CGCCAATTCACTCAAAATTGGAGACATCAACTTGCATGGCGGGCACCATG
AAGCCGTAAAATCCACCACTATCAGTTTCTTTGCCGCAATGCCCTTTTGG
AGCTGCTCGTTCCAGGATTCAACAGTGTGGCAGCTGATCACTTGTCCCTC
CTCGGCCTCTAGAATCC
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