CB304768

Overview
NameCB304768
Unique NameCB304768
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length620
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7670 contig Csv1_Contig7670:783..1402. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304768 vs. ExPASy Swiss-Prot
Match: DER22_ARATH (Derlin-2.2 OS=Arabidopsis thaliana GN=DER2.2 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.196e-30
Identity = 62/76 (81.58%), Postives = 68/76 (89.47%), Query Frame = -3
Query:  391 LGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEEVHQD 618
            LGFS+ VGASAWVDLLGMIAGHAYYFL +VYPRMT RRPLKTPSF+KALFADE VVVARP +VRFA  P +E+HQD
Sbjct:  169 LGFSILVGASAWVDLLGMIAGHAYYFLAEVYPRMTNRRPLKTPSFLKALFADEPVVVARPEDVRFAAAPFDEIHQD 244          
BLAST of CB304768 vs. ExPASy Swiss-Prot
Match: DER21_ARATH (Derlin-2.1 OS=Arabidopsis thaliana GN=DER2.1 PE=2 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 3.507e-28
Identity = 59/76 (77.63%), Postives = 65/76 (85.53%), Query Frame = -3
Query:  391 LGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEEVHQD 618
            LGFS+ VGASAW D LGMIAGHAYYFL  VYPRMT RRPLKTPSF+KALFADE VV+ARP +VRFA  P +E+HQD
Sbjct:  169 LGFSILVGASAWGDFLGMIAGHAYYFLAFVYPRMTDRRPLKTPSFLKALFADEPVVIARPEDVRFAHAPFDEIHQD 244          
BLAST of CB304768 vs. ExPASy Swiss-Prot
Match: DERL2_ORYSJ (Derlin-2 OS=Oryza sativa subsp. japonica GN=DER2 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.127e-25
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = -3
Query:  433 LGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPAN 618
            LGFS+ VG+S WVDLLGMIAGH YYFLEDVYPRMTGRRPLKTPSFIKALFAD+ VVVARP N
Sbjct:  169 LGFSILVGSSTWVDLLGMIAGHVYYFLEDVYPRMTGRRPLKTPSFIKALFADDNVVVARPPN 230          
BLAST of CB304768 vs. ExPASy Swiss-Prot
Match: DER22_MAIZE (Derlin-2.2 OS=Zea mays GN=DER2.2 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.190e-25
Identity = 53/62 (85.48%), Postives = 57/62 (91.94%), Query Frame = -3
Query:  433 LGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPAN 618
            LGFS+ VG+S WVDLLGMIAGH YYFLEDVYPRMTGRRPLKTPSFIKALFAD+ VVVA+P N
Sbjct:  169 LGFSILVGSSTWVDLLGMIAGHVYYFLEDVYPRMTGRRPLKTPSFIKALFADDNVVVAQPPN 230          
BLAST of CB304768 vs. ExPASy Swiss-Prot
Match: DER21_MAIZE (Derlin-2.1 OS=Zea mays GN=DER2.1 PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 6.190e-25
Identity = 53/62 (85.48%), Postives = 57/62 (91.94%), Query Frame = -3
Query:  433 LGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPAN 618
            LGFS+ VG+S WVDLLGMIAGH YYFLEDVYPRMTGRRPLKTPSFIKALFAD+ VVVA+P N
Sbjct:  169 LGFSILVGSSTWVDLLGMIAGHVYYFLEDVYPRMTGRRPLKTPSFIKALFADDNVVVAQPPN 230          
The following BLAST results are available for this feature:
BLAST of CB304768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
DER22_ARATH2.196e-3081.58Derlin-2.2 OS=Arabidopsis thaliana GN=DER2.2 PE=2 ... [more]
DER21_ARATH3.507e-2877.63Derlin-2.1 OS=Arabidopsis thaliana GN=DER2.1 PE=2 ... [more]
DERL2_ORYSJ2.127e-2587.10Derlin-2 OS=Oryza sativa subsp. japonica GN=DER2 P... [more]
DER22_MAIZE6.190e-2585.48Derlin-2.2 OS=Zea mays GN=DER2.2 PE=2 SV=1[more]
DER21_MAIZE6.190e-2585.48Derlin-2.1 OS=Zea mays GN=DER2.1 PE=2 SV=2[more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_F07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_F07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304768 ID=CB304768; Name=CB304768; organism=Citrus sinensis; type=EST; length=620bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTGAACATACATTATTCT
TACGATGAGTTGTCCTTACAACAAGTTAGAATATAATAATTAAAATAGTC
AACAAATGCACAAGAAGCACCCTGTACTAACTACAATCCTTCATTCCTCT
ATGTATAGATTACAAAACTCATCTTCAAATCCAGACAGATCTAGCAGCAA
CAGGATATAGCATATACAAAGTTAAGCTGTAATGTACTTATGACATAAAC
ACCATAATTAGCTAGTTCACATAAATACTTTCAAGACATGGGTCAACAAC
ACTTTCTGCAGGTCGCAGATTTCCCATACAGATCAATACAAACCAAAAGT
GAGCCCTCAAGAGAGTCCCATCCCTCAAAGGTTCTCATTAGTCTTGGTGA
ACTTCCTCTGCAGGTGGTGGAGCAAATCTCACATTTGCAGGCCGTGCTAC
CACTACAGCCTCATCCGCAAACAGTGCTTTGATAAAAGATGGTGTTTTTA
AGGGCCGGCGACCTGTCATCCTAGGATAAACATCTTCGAGAAAATAGTAG
GCATGACCGGCTATCATCCCCAGCAAATCCACCCAAGCGCTAGCGCCAAC
GAAGACTGAGAATCCCAAGA
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