CB304773

Overview
NameCB304773
Unique NameCB304773
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length554
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12479 contig Csv1_Contig12479:1416..1969. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CB304773 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.689e-25
Identity = 49/86 (56.98%), Postives = 68/86 (79.07%), Query Frame = -3 
Query:  292 LNSVQPVLSGVAVGAGWQSIVAYVNIACYYLIGIPIGVVLGYLTHLEVKGVWTGMLIGTFVQTVVLIIITLKTDWDKQVMKARERV 549
            LN +QP+LSGVA+G+GWQ++VAYVN+  YY+IG+PIG VLG+ T L V G+W GM+ G  +QT+ LI++TLKT+W  +V  A +RV
Sbjct:  407 LNGIQPILSGVAIGSGWQAVVAYVNLVTYYVIGLPIGCVLGFKTSLGVAGIWWGMIAGVILQTLTLIVLTLKTNWTSEVENAAQRV 492
[Close]
BLAST of CB304773 vs. ExPASy Swiss-Prot
Match: S47A2_RABIT (Multidrug and toxin extrusion protein 2 OS=Oryctolagus cuniculus GN=SLC47A2 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.996e-11
Identity = 32/108 (29.63%), Postives = 58/108 (53.70%), Query Frame = -3 
Query:  229 LLNSVQPVLSGVAVGAGWQSIVAYVNIACYYLIGIPIGVVLGYLTHLEVKGVWTGMLIGTFVQTVVLIIITLKTDWDKQVMKARERVNKWFIPESPEQSPNEQADFTA 552
            L+ +V  V  GV  G G Q+  A VN   YY++G+P+G+VL ++  + + G+W GML   F+  V  ++  ++ DW     +A++      + +  +Q   + A+ TA
Sbjct:  412 LVEAVCCVFGGVLRGTGKQAFGAIVNAIMYYIVGLPLGIVLTFVVGMRIMGLWLGMLTCIFLAAVTFVVYAVQLDWKLAAEEAQKHAG---LQQQQQQQQQQGAECTA 516
The following BLAST results are available for this feature:
BLAST of CB304773 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TT12_ARATH1.689e-2556.98Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
S47A2_RABIT8.996e-1129.63Multidrug and toxin extrusion protein 2 OS=Oryctol... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_G01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_G01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304773 ID=CB304773; Name=CB304773; organism=Citrus sinensis; type=EST; length=554bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAGGNNNNACAAAAAAATG
AAATTCCAATTTTTGATTCTCCATCTACATGAGCAGTGTAGTTGAACATC
AAGTCCCATGAGGCAGATTGAATGCTTGATTGTACTCTTGAAAGCAAAAA
CAAAACTGTAAGCAATTAATTGGCAAAAGATTTACACCAAGCAAAAAAGA
TTTTGGAAATTGAAGAAGTTTGATGTCAAGCTGTGAAATCTGCTTGTTCG
TTAGGCGATTGTTCCGGTGATTCGGGAATGAACCACTTGTTCACGCGTTC
GCGAGCCTTCATCACCTGTTTGTCCCAGTCCGTTTTCAAAGTGATGATGA
TAAGAACTACAGTTTGAACAAAAGTTCCAATCAACATTCCGGTCCAAACA
CCTTTGACTTCCAAATGGGTTAAATAACCAAGCACGACTCCGATAGGAAT
CCCAATCAGGTAGTAGCAAGCGATGTTAACATATGCTACGATACTCTGCC
ATCCAGCCCCGACAGCAACTCCGGAGAGCACTGGCTGCACACTGTTCAAA
AGTA
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