CB304774

Overview
NameCB304774
Unique NameCB304774
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length404
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304774_ssr382 microsatellite CB304774_ssr382:382..396. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2579 contig Csv1_Contig2579:408..811. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304774 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.641e-23
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = -3
Query:  121 MSDTCGNCVCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 318
            MSDTCGNC CAD++QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CB304774 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.757e-18
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = -3
Query:  118 TCGNCVCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCGS 309
            TCGNC C D+SQCVKKG+SY  D VET+ S+V  V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of CB304774 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.907e-18
Identity = 43/65 (66.15%), Postives = 48/65 (73.85%), Query Frame = -3
Query:  124 MSDTCGNCVCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 318
            MSD CGNC CAD SQCVKKG+S   D VETD S++  VV M V AAE+ G CKCG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CB304774 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.336e-15
Identity = 37/65 (56.92%), Postives = 44/65 (67.69%), Query Frame = -3
Query:  124 MSDTCGNCVCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 318
            MS  C NC C+D SQC KKG S+    VET+   + TV+ MD  AAE  GNCKCGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of CB304774 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.336e-15
Identity = 38/66 (57.58%), Postives = 45/66 (68.18%), Query Frame = -3
Query:  121 MSDTCGNCVCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 318
            MS  C NC CAD +QCVKKG+SY    VET+   + TV V D  AAE +G CKCG  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of CB304774 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.078e-15
Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = -3
Query:  121 MSDTCGNCVCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 318
            MSD CGNC CAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CB304774 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.078e-15
Identity = 35/66 (53.03%), Postives = 42/66 (63.64%), Query Frame = -3
Query:  121 MSDTCGNCVCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 318
            MSD CGNC CAD+SQCVKKG+SY    VE + S        +V A E  G CKCG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CB304774 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.107e-13
Identity = 32/66 (48.48%), Postives = 40/66 (60.61%), Query Frame = -3
Query:  121 MSDTCGNCVCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 318
            MSD CGNC CAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of CB304774 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.081e-12
Identity = 31/66 (46.97%), Postives = 40/66 (60.61%), Query Frame = -3
Query:  121 MSDTCGNCVCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 318
            MSD CG+C CAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of CB304774 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA8.641e-2368.18Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC3.757e-1859.38Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE4.907e-1866.15Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV1.336e-1556.92Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO1.336e-1557.58Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ5.078e-1553.03Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI5.078e-1553.03Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ8.107e-1348.48Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI3.081e-1246.97Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IIaR_G02 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IIaR_G02 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304774 ID=CB304774; Name=CB304774; organism=Citrus sinensis; type=EST; length=404bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCACCCTTACATTATTCTT
AACCCCCACAATATTTAGGCACACTTGCAGCTTCTTATTTTTTGCTGCAT
GTGTTTGCTTATTAGTGACTACCACAAGTGCAGTTCACACAAGCGCAGGT
GGGGCCGCACTTGCAGTTACCTTCAGCCTCAGCAGCCTGAACGTCCATGA
CAACAACGGTGCTGACAAAGCTCAAGTCAGTCTCGACGAAGTCAGCAGCA
TAGCTGCTTCCCTTCTTCACACACTGGCTCCTGTCAGCGCAGACGCAGTT
GCCGCAGGTGTCCGACATGTTGATTGAGCTTAGAACTTAAAACTTAAAAC
TGGAAATAGAGGGCTCTTTATTGTACGAAACTTGCTTTGCTTTGCTGTGA
TCCC
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