CB304797

Overview
NameCB304797
Unique NameCB304797
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length550
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10655 contig Csv1_Contig10655:236..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304797 vs. ExPASy Swiss-Prot
Match: PIN1_MALDO (Peptidyl-prolyl cis-trans isomerase 1 OS=Malus domestica GN=PIN1 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 7.862e-36
Identity = 70/91 (76.92%), Postives = 85/91 (93.41%), Query Frame = -3
Query:  276 EGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 548
            EG++I NTTR+SAVSQL+A+RDDI+SGKAKFD++A+R SDCSSAKRGGDLG FGR QMQKPFEEAT+ LK+GE+S++VDTDSGVH+I RTG
Sbjct:   31 EGQIIRNTTRDSAVSQLKALRDDILSGKAKFDDLAARYSDCSSAKRGGDLGPFGRNQMQKPFEEATFALKVGEMSDIVDTDSGVHIIKRTG 121          
BLAST of CB304797 vs. ExPASy Swiss-Prot
Match: PIN1_ARATH (Peptidyl-prolyl cis-trans isomerase 1 OS=Arabidopsis thaliana GN=PIN1 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.902e-35
Identity = 69/90 (76.67%), Postives = 84/90 (93.33%), Query Frame = -3
Query:  279 EGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 548
            EG++I  TTRE+AV QL++IR+DIVSGKA F+EVA+R+SDCSSAKRGGDLG+FGRGQMQKPFEEATY LK+G+IS++VDTDSGVH+I RT
Sbjct:   29 EGKIILTTTREAAVEQLKSIREDIVSGKANFEEVATRVSDCSSAKRGGDLGSFGRGQMQKPFEEATYALKVGDISDIVDTDSGVHIIKRT 118          
BLAST of CB304797 vs. ExPASy Swiss-Prot
Match: PIN1_DIGLA (Peptidyl-prolyl cis-trans isomerase 1 OS=Digitalis lanata GN=PARV12.8 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.696e-30
Identity = 63/91 (69.23%), Postives = 78/91 (85.71%), Query Frame = -3
Query:  276 EGRVISNTTRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRTG 548
            +G +IS TTR+ AVSQLQ++R +++S  A F ++ASR S CSSAKRGGDLG FGRGQMQKPFEEAT+ LK+GEIS++VDTDSGVH+I RTG
Sbjct:   28 DGSLISATTRDDAVSQLQSLRQELLSDPASFSDLASRHSHCSSAKRGGDLGPFGRGQMQKPFEEATFALKVGEISDIVDTDSGVHIIKRTG 118          
BLAST of CB304797 vs. ExPASy Swiss-Prot
Match: DOD_DROME (Protein dodo OS=Drosophila melanogaster GN=dod PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 7.898e-20
Identity = 45/81 (55.56%), Postives = 60/81 (74.07%), Query Frame = -3
Query:  282 TRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMR 524
            T+E A   L+  R+ IV  +A FDE+A   SDCSSAKRGGDLG FGRGQMQ  FE+A + L + ++S +VD+DSG+H+I+R
Sbjct:   84 TKEEAQLLLEVYRNKIVQQEATFDELARSYSDCSSAKRGGDLGKFGRGQMQAAFEDAAFKLNVNQLSGIVDSDSGLHIILR 164          
BLAST of CB304797 vs. ExPASy Swiss-Prot
Match: PIN1_RHIOR (Peptidyl-prolyl cis-trans isomerase pin1 OS=Rhizopus oryzae GN=pin1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.001e-19
Identity = 47/82 (57.32%), Postives = 61/82 (74.39%), Query Frame = -3
Query:  279 TRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 524
            ++E A+  L   +  I SG+     +A+  SDC+SAKRGGDLG F RGQMQKPFEEAT+ L++GE+S+ V TDSGVHLI+RT
Sbjct:   68 SKEEALKILTDFQHKIESGQETLSALATNYSDCTSAKRGGDLGYFERGQMQKPFEEATFALQVGELSKPVWTDSGVHLILRT 149          
BLAST of CB304797 vs. ExPASy Swiss-Prot
Match: PIN1_MACFA (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 OS=Macaca fascicularis GN=PIN1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.318e-18
Identity = 44/82 (53.66%), Postives = 59/82 (71.95%), Query Frame = -3
Query:  279 TRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 524
            T+E A+  +      I SG+  F+ +AS+ SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct:   81 TKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162          
BLAST of CB304797 vs. ExPASy Swiss-Prot
Match: PIN1_HUMAN (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 OS=Homo sapiens GN=PIN1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.318e-18
Identity = 44/82 (53.66%), Postives = 59/82 (71.95%), Query Frame = -3
Query:  279 TRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 524
            T+E A+  +      I SG+  F+ +AS+ SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct:   81 TKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162          
BLAST of CB304797 vs. ExPASy Swiss-Prot
Match: PIN1_BOVIN (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 OS=Bos taurus GN=PIN1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.318e-18
Identity = 44/82 (53.66%), Postives = 59/82 (71.95%), Query Frame = -3
Query:  279 TRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 524
            T+E A+  +      I SG+  F+ +AS+ SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct:   81 TKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGAFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 162          
BLAST of CB304797 vs. ExPASy Swiss-Prot
Match: PIN1_MOUSE (Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 OS=Mus musculus GN=Pin1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.655e-18
Identity = 43/82 (52.44%), Postives = 59/82 (71.95%), Query Frame = -3
Query:  279 TRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMRT 524
            ++E A+  +      I SG+  F+ +AS+ SDCSSAK  GDLG F RGQMQKPFE+A++ L+ GE+S  V TDSG+H+I+RT
Sbjct:   83 SKEEALELINGYIQKIKSGEEDFESLASQFSDCSSAKARGDLGPFSRGQMQKPFEDASFALRTGEMSGPVFTDSGIHIILRT 164          
BLAST of CB304797 vs. ExPASy Swiss-Prot
Match: SSP1_NEUCR (Peptidyl-prolyl cis-trans isomerase ssp-1 OS=Neurospora crassa GN=ssp-1 PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.067e-16
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = -3
Query:  282 TRESAVSQLQAIRDDIVSGKAKFDEVASRLSDCSSAKRGGDLGNFGRGQMQKPFEEATYNLKIGEISEVVDTDSGVHLIMR 524
            T++ A++ LQ     I SG     E+A   SDCSSA++ GDLG FGRG MQK FE+A + LK GEIS +VDT SG+HLI R
Sbjct:  100 TKQEALTTLQGFEQRIKSGSISLGELALTESDCSSARKRGDLGYFGRGDMQKEFEDAAFALKPGEISGIVDTASGLHLIER 180          
The following BLAST results are available for this feature:
BLAST of CB304797 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PIN1_MALDO7.862e-3676.92Peptidyl-prolyl cis-trans isomerase 1 OS=Malus dom... [more]
PIN1_ARATH3.902e-3576.67Peptidyl-prolyl cis-trans isomerase 1 OS=Arabidops... [more]
PIN1_DIGLA1.696e-3069.23Peptidyl-prolyl cis-trans isomerase 1 OS=Digitalis... [more]
DOD_DROME7.898e-2055.56Protein dodo OS=Drosophila melanogaster GN=dod PE=... [more]
PIN1_RHIOR3.001e-1957.32Peptidyl-prolyl cis-trans isomerase pin1 OS=Rhizop... [more]
PIN1_MACFA3.318e-1853.66Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
PIN1_HUMAN3.318e-1853.66Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
PIN1_BOVIN3.318e-1853.66Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
PIN1_MOUSE9.655e-1852.44Peptidyl-prolyl cis-trans isomerase NIMA-interacti... [more]
SSP1_NEUCR1.067e-1654.32Peptidyl-prolyl cis-trans isomerase ssp-1 OS=Neuro... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_A10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_A10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304797 ID=CB304797; Name=CB304797; organism=Citrus sinensis; type=EST; length=550bp
TTTNNNTTTTTTTTTNNNTTTTTTTTTTTTNNGTAACCAAACGAGGTGAA
TTTTTTGGAGTCATTCAAGCAGATCCCAAACCACAATCAGCCATGTATAA
ACTACATGCTTTAAGAAAACAACTCCAACGAGCCAAATATAGCATGGCTC
GCCAGCATTATCATAAGAAGACCAACATTCATCTGAAGTAAAACCAACGA
CAACATTCTTGAATATGTTTCCAGAATATACTGAACAAATCAGTTAATCC
ATTATGAGCTTATCATTAATAATCAACCAGTCCTCATGATAAGGTGAACC
CCACTATCAGTATCCACAACTTCACTTATCTCACCAATTTTAAGATTATA
TGTTGCCTCCTCAAAAGGCTTCTGCATCTGGCCTCGACCAAAATTACCGA
GATCACCGCCGCGTTTGGCGGAGCTGCAATCGGAGAGGCGAGAGGCGACT
TCATCGAACTTGGCCTTGCCGGAAACGATGTCGTCTCGGATGGCTTGGAG
TTGAGAGACGGCGCTCTCTCTAGTGGTGTTGCTGATGACTCTACCTTCCC
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