CB304828

Overview
NameCB304828
Unique NameCB304828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10252 contig Csv1_Contig10252:102..753. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304828 vs. ExPASy Swiss-Prot
Match: IMP3_MOUSE (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Mus musculus GN=Imp3 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.788e-50
Identity = 91/170 (53.53%), Postives = 131/170 (77.06%), Query Frame = -1
Query:  146 VVKKVNFLEWK-REGGHREAMILQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDHLSVSSFCRRRLATILVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDTSKIKRKVLEYNDKVDDYD 652
            ++K+V+FL W+  +    E  +L+RY +  R++Y +Y+ L   V++L   L+ +  RDPFR+  +  LL+KLY MG++P+R SL LCD +S SSFCRRRL T+L++L+ A+HL+ AV ++EQGH+RVGP+ VTDPAFLVTR+MEDF+TWVD+SKIKR VLEYN++ DD+D
Sbjct:   12 LLKQVDFLNWEVTDHNLHELRVLRRYRLQRREEYTRYNQLSRAVRELARRLRDLPERDPFRVRASAALLDKLYAMGLVPTRGSLELCDSVSASSFCRRRLPTLLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181          
BLAST of CB304828 vs. ExPASy Swiss-Prot
Match: IMP3_BOVIN (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Bos taurus GN=IMP3 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.807e-49
Identity = 89/170 (52.35%), Postives = 130/170 (76.47%), Query Frame = -1
Query:  146 VVKKVNFLEWK-REGGHREAMILQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDHLSVSSFCRRRLATILVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDTSKIKRKVLEYNDKVDDYD 652
            ++K+V+FL W+  +    E  +L+RY +  R+DY +Y+ L   V++L   L+ +  RDPFR+  +  LL+KLY +G++P+R S  LCD ++ SSFCRRRL T+L++L+ A+HL+ AV ++EQGH+RVGP+ VTDPAFLVTR+MEDF+TWVD+SKIKR VLEYN++ DD+D
Sbjct:   12 LLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDPFRVRSSAALLDKLYALGLVPTRGSQELCDFVTASSFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181          
BLAST of CB304828 vs. ExPASy Swiss-Prot
Match: IMP3_YEAST (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Saccharomyces cerevisiae GN=IMP3 PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.360e-49
Identity = 85/170 (50.00%), Postives = 130/170 (76.47%), Query Frame = -1
Query:  146 VVKKVNFLEWKREGGHREAMILQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLA-LCDHLSVSSFCRRRLATILVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDTSKIKRKVLEYNDKVDDYD 652
            ++KKV+FLEWK++ GHR+  +++ YH+  R+DY KY+ +CG +++L N L  + P DPFR +   +LL+KLY MGV+ ++  ++ L + ++VS+ CRRRL  I+ RLK AE +++AV +IEQGH+RVGP  + DPA+LVTRNMED++TWVD SKIK+ +L Y +++DD+D
Sbjct:   12 LLKKVDFLEWKQDQGHRDTQVMRTYHIQNREDYHKYNRICGDIRRLANKLSLLPPTDPFRRKHEQLLLDKLYAMGVLTTKSKISDLENKVTVSAICRRRLPVIMHRLKMAETIQDAVKFIEQGHVRVGPNLINDPAYLVTRNMEDYVTWVDNSKIKKTLLRYRNQIDDFD 181          
BLAST of CB304828 vs. ExPASy Swiss-Prot
Match: IMP3_HUMAN (U3 small nucleolar ribonucleoprotein protein IMP3 OS=Homo sapiens GN=IMP3 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.082e-49
Identity = 89/170 (52.35%), Postives = 130/170 (76.47%), Query Frame = -1
Query:  146 VVKKVNFLEWK-REGGHREAMILQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDHLSVSSFCRRRLATILVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDTSKIKRKVLEYNDKVDDYD 652
            ++K+V+FL W+  +    E  +L+RY +  R+DY +Y+ L   V++L   L+ +  RD FR+  +  LL+KLY +G++P+R SL LCD ++ SSFCRRRL T+L++L+ A+HL+ AV ++EQGH+RVGP+ VTDPAFLVTR+MEDF+TWVD+SKIKR VLEYN++ DD+D
Sbjct:   12 LLKQVDFLNWEVTDHNLHELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDQFRVRASAALLDKLYALGLVPTRGSLELCDFVTASSFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAFLVTRSMEDFVTWVDSSKIKRHVLEYNEERDDFD 181          
BLAST of CB304828 vs. ExPASy Swiss-Prot
Match: IMP3_SCHPO (U3 small nucleolar ribonucleoprotein protein imp3 OS=Schizosaccharomyces pombe GN=imp3 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.998e-48
Identity = 82/173 (47.40%), Postives = 134/173 (77.46%), Query Frame = -1
Query:  140 VVKKVNFLEWKRE-GGHREAMILQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDH-LSVSSFCRRRLATILVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDTSKIKRKVLEYNDKVDDYDAM 652
            +++KV+FL +K +   HR+ M+++RYH++ R++Y+KY+ +CG  ++L + L  +DP DPFR++  ++LLEKL++MG++PS+  ++  ++  +VS+ CRRRL  I+ +L+ ++ + EA   IEQGH+RVGP  +TDPA+LVTR++EDF+TW DTSKIKR + +YNDK+DDYD +
Sbjct:   11 LLRKVDFLNYKNDDNNHRDVMVMRRYHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGILPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPHVITDPAYLVTRSLEDFVTWTDTSKIKRTIAKYNDKLDDYDLL 183          
BLAST of CB304828 vs. ExPASy Swiss-Prot
Match: YS4L_PNECA (Putative 40S ribosomal protein S4-like (Fragment) OS=Pneumocystis carinii GN=RBP PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.754e-36
Identity = 73/158 (46.20%), Postives = 110/158 (69.62%), Query Frame = -1
Query:  185 VVKKVNFLEWKRE-GGHREAMILQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDH-LSVSSFCRRRLATILVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDTSKIKR 652
            ++ K +FL +K++   HR+  +++RYH+  R+DY KY+ L G++  + N L  ++P D F      MLL KL++M ++ S   L+  ++ L+VS+FCRRRL  ++ RLK  E +  +V Y+E GH+RVGPE +TDPAF VTRNMEDF+TWVD+SKI+R
Sbjct:   11 LLTKHDFLNYKKDDNNHRDVNVIRRYHIPQREDYFKYNQLVGLLLGIANKLSLLEPTDSFGNLHKKMLLGKLFDMALLTSTPKLSDVENKLTVSAFCRRRLPVVMCRLKMCETVSTSVKYVEHGHVRVGPEVITDPAFFVTRNMEDFVTWVDSSKIRR 168          
BLAST of CB304828 vs. ExPASy Swiss-Prot
Match: YS4L_CAEEL (Putative 40S ribosomal protein S4-like OS=Caenorhabditis elegans GN=C48B6.2 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.009e-33
Identity = 62/172 (36.05%), Postives = 111/172 (64.53%), Query Frame = -1
Query:  137 VVKKVNFLEWKREGGHREAMILQRYHVTGRDDYKKYSSLCGMVQKLVNILKQMDPRDPFRIEMTDMLLEKLYNMGVIPSRKSLALCDHLSVSSFCRRRLATILVRLKFAEHLKEAVTYIEQGHIRVGPETVTDPAFLVTRNMEDFITWVDTSKIKRKVLEYNDKVDDYDAMN 652
            ++KK +F+ W+ +   ++  +L++++V  R+ Y  Y++L    +++ +++K +   DPFR + T+ +L K Y  G++P+  +L     ++ +SF RRRL  ++  +   E +K A   +EQGH+R+G + VTDPAF+VTR+ ED ITW   SKIK+ V++YN+  DD+D M+
Sbjct:   12 LLKKTDFMSWQVDQQGKQGDMLRKFYVKKREHYALYNTLAAKSREVADLIKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDTLERIGKVTGASFARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDMITWTKASKIKKHVMDYNNTRDDFDLMD 183          
The following BLAST results are available for this feature:
BLAST of CB304828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
IMP3_MOUSE2.788e-5053.53U3 small nucleolar ribonucleoprotein protein IMP3 ... [more]
IMP3_BOVIN1.807e-4952.35U3 small nucleolar ribonucleoprotein protein IMP3 ... [more]
IMP3_YEAST2.360e-4950.00U3 small nucleolar ribonucleoprotein protein IMP3 ... [more]
IMP3_HUMAN3.082e-4952.35U3 small nucleolar ribonucleoprotein protein IMP3 ... [more]
IMP3_SCHPO1.998e-4847.40U3 small nucleolar ribonucleoprotein protein imp3 ... [more]
YS4L_PNECA1.754e-3646.20Putative 40S ribosomal protein S4-like (Fragment) ... [more]
YS4L_CAEEL9.009e-3336.05Putative 40S ribosomal protein S4-like OS=Caenorha... [more]
back to top
Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_F03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_F03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304828 ID=CB304828; Name=CB304828; organism=Citrus sinensis; type=EST; length=652bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGACAAGAAGATAACTTTT
AATTGCCCATATGAACATCCTACAACATGAAATTCAAACAAAAATGTTCA
AAAACAAAAGAAAACACAGATCTTAATGGGTCTTCAGTTCATTGCATCAT
AATCATCCACCTTATCATTGTATTCCAAGACCTTTCTCTTTATCTTGGAT
GTATCTACCCATGTAATAAAGTCTTCCATATTCCTGGTCACGAGGAATGC
AGGGTCTGTAACTGTCTCCGGTCCGACTCGAATGTGTCCCTGTTCAATAT
ATGTCACAGCTTCTTTCAGGTGCTCAGCAAACTTCAACCGCACCAAAATG
GTGGCAAGCCTGCGTCTACAGAAGGATGAAACTGATAGATGATCACACAA
AGCCAAGCTTTTCCTGCTTGGTATTACACCCATGTTATATAGCTTCTCGA
GAAGCATATCAGTCATCTCAATACGAAAAGGGTCTCTTGGATCCATCTGC
TTCAATATATTAACCAGCTTCTGCACCATCCCGCACAAACTTGAATACTT
CTTGTAATCGTCGCGGCCGGTGACGTGGTACCGCTGCAATATCATGGCTT
CCCTGTGGCCACCTTCTCTTTTCCATTCTAAAAAATTGACTTTTTTAACA
AC
back to top