CB304830

Overview
NameCB304830
Unique NameCB304830
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length575
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 3.290e-51
Identity = 103/121 (85.12%), Postives = 111/121 (91.74%), Query Frame = -3
Query:  214 PTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGE-PAPSNIKEGQTIVVGGASEANTKKPCCFSS 573
            PTTFENVSRWLKELRDHADSNIVIM+IGNKTDLKHLRAVATEDAQSYAE+EGLSFIETSALEA+NVEKAFQTILSE+YRIISKKS+SS +  A +NIKEGQTI V   SE+N KKPCC SS
Sbjct:   97 PTTFENVSRWLKELRDHADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKKSISSDQTTANANIKEGQTIDVAATSESNAKKPCCSSS 217          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.704e-37
Identity = 78/115 (67.83%), Postives = 96/115 (83.48%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 567
            TF+NV RWL+ELRDHADSNIVIMM GNK+DLKHLRAV+ ED Q+ AE+EGLSF+ETSALEA+N+EKAFQTIL+EIY IISKK+L++ E + +   +G TI V  AS AN ++ CC
Sbjct:   99 TFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEIYHIISKKALAAQEASSNLPGQGTTINVADAS-ANQRRSCC 212          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 148.288 bits (373), Expect = 2.531e-35
Identity = 80/120 (66.67%), Postives = 92/120 (76.67%), Query Frame = -3
Query:  217 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIK---EGQTIVVGGASEANTKKPCCFS 567
            TF+NV RWL+ELRDHADSNIVIMM GNK+DL HLR+VA ED QS AE+EGLSF+ETSALEA NVEKAFQTIL EIY IISKK+L++ E A +N     +G TI V   S    K+ CC S
Sbjct:   99 TFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKKALAAQEAAAANSAIPGQGTTINVDDTS-GGAKRACCSS 217          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.655e-34
Identity = 76/117 (64.96%), Postives = 88/117 (75.21%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKP--CC 567
            TFENV RWLKELRDHADSNIVIM++GNK+DLKHLR V TE AQ++ EREGLSFIETSALE+ NVEKAFQ IL+EIY I+SKK L S +  P   +    IV+  A +   KK   CC
Sbjct:   99 TFENVERWLKELRDHADSNIVIMLVGNKSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQILTEIYHIVSKKVLDSEDNRPKIGEGRDVIVIDNAHDDGGKKKGGCC 215          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.773e-34
Identity = 72/116 (62.07%), Postives = 89/116 (76.72%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGA-SEANTKKPCC 567
            TF+NV RWL+ELRDHADSNIVIMM GNK+DL HLRAV+ +D  + +E+EGLSF+ETSALEA N+EKAFQTIL+EIY I+SKK+L++ E        GQ   +  A +  NTKK CC
Sbjct:   99 TFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEATAGASVPGQGTTINVADTSGNTKKGCC 214          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.063e-33
Identity = 71/116 (61.21%), Postives = 92/116 (79.31%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQ-TIVVGGASEANTKKPCC 567
            TF+NV RWL+ELRDH DSNIVI++ GNK+DLKHLRAV+ +D Q+  ++EGLSF+ETSALEA+NV+KAFQTIL++IY IISKK+L++ E A S    GQ T +    + AN K+ CC
Sbjct:   99 TFDNVQRWLRELRDHRDSNIVIILAGNKSDLKHLRAVSEQDDQALVKKEGLSFLETSALEALNVDKAFQTILTDIYHIISKKALAAQEAAASTALPGQGTTINVSDNSANVKRGCC 214          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.278e-33
Identity = 69/118 (58.47%), Postives = 91/118 (77.12%), Query Frame = -3
Query:  214 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCCFSS 567
            TFENV RWLKELRDH D NIVIM++GNK DL+HLRAV+TEDA+++AERE   F+ETSALE++NVE AF  +L+EIY+++ +K+L  G+  P+ + +GQTI VG    +  KK  C SS
Sbjct:  101 TFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVVCRKALEVGDD-PAALPKGQTINVGKDDVSAVKKVGCCSS 217          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RB11A_CHICK (Ras-related protein Rab-11A OS=Gallus gallus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.421e-32
Identity = 71/118 (60.17%), Postives = 91/118 (77.12%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLS---SGEPAPSNIKEGQTIVVGGASEANTKKPCC 567
            T+ENV RWLKELRDHADSNIVIM++GNK+DL+HLRAV T++A+++AE+ GLSFIETSAL++ NVE AFQTIL+EIYRI+S+K +S     + +PSN      I V   +E   K  CC
Sbjct:   98 TYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSN--NVVPIHVPPTTENKPKMQCC 213          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RB11A_RAT (Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 4.468e-32
Identity = 71/118 (60.17%), Postives = 91/118 (77.12%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLS---SGEPAPSNIKEGQTIVVGGASEANTKKPCC 567
            T+ENV RWLKELRDHADSNIVIM++GNK+DL+HLRAV T++A+++AE+ GLSFIETSAL++ NVE AFQTIL+EIYRI+S+K +S     + +PSN      I V   +E   K  CC
Sbjct:   98 TYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSN--NVVPIHVPPTTENKPKVQCC 213          
BLAST of CB304830 vs. ExPASy Swiss-Prot
Match: RB11A_RABIT (Ras-related protein Rab-11A OS=Oryctolagus cuniculus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 4.468e-32
Identity = 71/118 (60.17%), Postives = 91/118 (77.12%), Query Frame = -3
Query:  223 TFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLS---SGEPAPSNIKEGQTIVVGGASEANTKKPCC 567
            T+ENV RWLKELRDHADSNIVIM++GNK+DL+HLRAV T++A+++AE+ GLSFIETSAL++ NVE AFQTIL+EIYRI+S+K +S     + +PSN      I V   +E   K  CC
Sbjct:   98 TYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSN--NVVPIHVPPTTENKPKVQCC 213          
The following BLAST results are available for this feature:
BLAST of CB304830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
RAA2A_ARATH3.290e-5185.12Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
RB2BV_BETVU2.704e-3767.83Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RAA2C_ARATH2.531e-3566.67Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
YPTC6_CHLRE3.655e-3464.96Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RB11C_LOTJA4.773e-3462.07Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RB11A_TOBAC1.063e-3361.21Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
RB11B_TOBAC5.278e-3358.47Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RB11A_CHICK3.421e-3260.17Ras-related protein Rab-11A OS=Gallus gallus GN=RA... [more]
RB11A_RAT4.468e-3260.17Ras-related protein Rab-11A OS=Rattus norvegicus G... [more]
RB11A_RABIT4.468e-3260.17Ras-related protein Rab-11A OS=Oryctolagus cunicul... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_F05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_F05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304830 ID=CB304830; Name=CB304830; organism=Citrus sinensis; type=EST; length=575bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCAAAAGTAATTCTGATAT
CACAACAACAAATGAGGAGAATAATTCAAATTTGACATTGTTAACAACAA
ATAATAAAAGCTTAAACAATAAACCATTGAGAGAATGAAAGATTTAACTT
GGAAGCCCGACACGACAAAATGGGAAGAAATTGAGATAAACAAAGAAGAC
AGACCCATCTTTAGGATGAAAAGCAACAAGGTTTCTTTGTGTTGGCCTCT
GATGCCCCTCCTACTACGATAGTCTGTCCTTCTTTGATGTTTGAAGGAGC
TGGCTCCCCTGAAGAGAGGGACTTCTTGCTGATTATCCGGTATATCTCTG
AGAGAATTGTCTGGAAAGCCTTCTCGACATTTATTGCTTCAAGAGCTGAG
GTTTCAATGAAGGAAAGCCCTTCTCTCTCAGCATAGCTTTGGGCATCCTC
TGTGGCAACAGCTCGGAGGTGTTTCAGATCAGTCTTATTGCCAATCATCA
TGATCACAATGTTGGAGTCTGCGTGGTCCCTCAGTTCCTTCAGCCATCGG
CTCACATTTTCAAATGTTGTTGGTT
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