CB304835

Overview
NameCB304835
Unique NameCB304835
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304835_ssr36 microsatellite CB304835_ssr36:36..47. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: RH57_ARATH (DEAD-box ATP-dependent RNA helicase 57 OS=Arabidopsis thaliana GN=RH57 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.917e-43
Identity = 81/98 (82.65%), Postives = 90/98 (91.84%), Query Frame = -2
Query:  357 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKLKGKKHRPRRESISTKPK 650
            ATDVIARGMDFKG+NCVINYDFPDS +AYIHRIGR+GRAGRSGEAIT YTE D+PFLRNIAN M +SGCEVPSWI++L K K +KHRPRR+SISTKPK
Sbjct:  436 ATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEAITFYTEQDVPFLRNIANTMMSSGCEVPSWIMSLKKKKWRKHRPRRDSISTKPK 533          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: RH57_ORYSJ (DEAD-box ATP-dependent RNA helicase 57 OS=Oryza sativa subsp. japonica GN=Os07g0647900 PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 2.864e-39
Identity = 76/99 (76.77%), Postives = 87/99 (87.88%), Query Frame = -2
Query:  354 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKLKGKKHRPRRESISTKPKD 650
            AT+VIARGMDFKGVNCVINYDFP+S +AYIHRIGR+GRAGRSGEAIT +TE+D PFLRNIAN++ +SGCEVPSWI  LPKLK KKHR  R+ IST P +
Sbjct:  441 ATEVIARGMDFKGVNCVINYDFPESASAYIHRIGRSGRAGRSGEAITFFTEEDKPFLRNIANVLISSGCEVPSWIKALPKLKRKKHRVNRDPISTLPDE 539          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DDX52_HUMAN (Probable ATP-dependent RNA helicase DDX52 OS=Homo sapiens GN=DDX52 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.780e-26
Identity = 59/103 (57.28%), Postives = 73/103 (70.87%), Query Frame = -2
Query:  357 TDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKLKGKKHRP------RRESISTKPK 647
            T ++ARG+DFKGVN VINYDFP S   YIHRIGRTGRAG  G+AIT +TEDD P LR++AN+++ +GC VP +I    KL  K+ +        RESIST PK
Sbjct:  469 TALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNKGKAITFFTEDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKPLERESISTTPK 571          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DDX52_BOVIN (Probable ATP-dependent RNA helicase DDX52 OS=Bos taurus GN=DDX52 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.631e-26
Identity = 58/103 (56.31%), Postives = 73/103 (70.87%), Query Frame = -2
Query:  357 TDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKLKGKKHRP------RRESISTKPK 647
            T ++ARG+DFKGVN VINYDFP S   YIHRIGRTGRAG  G+A+T +TEDD P LR++AN+++ +GC VP +I    KL  K+ +        RESIST PK
Sbjct:  467 TALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFTEDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKPLERESISTTPK 569          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DDX52_RAT (Probable ATP-dependent RNA helicase DDX52 OS=Rattus norvegicus GN=Ddx52 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.743e-26
Identity = 58/103 (56.31%), Postives = 73/103 (70.87%), Query Frame = -2
Query:  357 TDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKLKGKKHRP------RRESISTKPK 647
            T ++ARG+DFKGVN VINYDFP S   YIHRIGRTGRAG  G+A+T +TEDD P LR++AN+++ +GC VP +I    KL  K+ +        RESIST PK
Sbjct:  470 TALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTEDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSKQKKKMIKKPLERESISTTPK 572          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: ROK1_SCHPO (ATP-dependent RNA helicase rok1 OS=Schizosaccharomyces pombe GN=rok1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.090e-26
Identity = 54/102 (52.94%), Postives = 78/102 (76.47%), Query Frame = -2
Query:  363 ATDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLP------KLKGKKHRPRRESISTK 650
            ATD++ARG+DF GV  VIN+DFP S  +YIHRIGRTGRAG +G+A+T +T++D  +++ IA +M++SGCEVP+W++ LP      K K KK  P+R+ I+T+
Sbjct:  344 ATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGRTGRAGNTGQAVTFFTKEDGEYIKLIAGVMRSSGCEVPNWVMALPKPSKEMKKKLKKSPPKRKRITTR 445          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: DDX52_MOUSE (Probable ATP-dependent RNA helicase DDX52 OS=Mus musculus GN=Ddx52 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.090e-26
Identity = 57/113 (50.44%), Postives = 79/113 (69.91%), Query Frame = -2
Query:  309 TDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKLKGKKHRPRRESISTKPKDGEE*SCKSPSFFLKE 647
            T ++ARG+DFKGVN VINYDFP S   YIHRIGRTGRAG  G+A+T +TEDD P LR++AN+++ +GC VP +I    KL  K    +++ +  KP + E   C +P +FL++
Sbjct:  470 TALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTEDDKPLLRSVANVIQQAGCPVPEYIKGFQKLLSK----QKKKMIKKPLERES-ICTTPKYFLEQ 577          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: ROK1_CANGA (ATP-dependent RNA helicase ROK1 OS=Candida glabrata GN=ROK1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.057e-25
Identity = 59/106 (55.66%), Postives = 74/106 (69.81%), Query Frame = -2
Query:  357 TDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKL---------KGKKHRPRRESISTKPK 647
            TDV+ARG+DFKGVN VINYD P +  AY+HRIGRTGR GRSG+A+TLYT+ D   ++ I N+MK SGCEV  W+  + K+         KGK H+  R+ IST PK
Sbjct:  431 TDVLARGIDFKGVNLVINYDVPTTAQAYVHRIGRTGRGGRSGKAVTLYTKLDSVAIKPIINVMKQSGCEVEGWMNNISKITKREKEAIKKGKSHK-ERDQISTVPK 535          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: ROK1_YEAST (ATP-dependent RNA helicase ROK1 OS=Saccharomyces cerevisiae GN=ROK1 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.244e-25
Identity = 58/106 (54.72%), Postives = 73/106 (68.87%), Query Frame = -2
Query:  357 TDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKL---------KGKKHRPRRESISTKPK 647
            TDV+ARG+DFKGVN VINYD P S  AY+HRIGRTGR GRSG+AIT YT+ D   ++ I N+MK SGCEV  W+  + K+          GK H+ R++ I+T PK
Sbjct:  429 TDVLARGIDFKGVNLVINYDVPGSSQAYVHRIGRTGRGGRSGKAITFYTKQDSVAIKPIINVMKQSGCEVSEWMDKMAKMTRKEKESIKNGKAHKERKQ-ITTVPK 533          
BLAST of CB304835 vs. ExPASy Swiss-Prot
Match: ROK1_YEAS7 (ATP-dependent RNA helicase ROK1 OS=Saccharomyces cerevisiae (strain YJM789) GN=ROK1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.244e-25
Identity = 58/106 (54.72%), Postives = 73/106 (68.87%), Query Frame = -2
Query:  357 TDVIARGMDFKGVNCVINYDFPDSGAAYIHRIGRTGRAGRSGEAITLYTEDDIPFLRNIANLMKASGCEVPSWILTLPKL---------KGKKHRPRRESISTKPK 647
            TDV+ARG+DFKGVN VINYD P S  AY+HRIGRTGR GRSG+AIT YT+ D   ++ I N+MK SGCEV  W+  + K+          GK H+ R++ I+T PK
Sbjct:  429 TDVLARGIDFKGVNLVINYDVPGSSQAYVHRIGRTGRGGRSGKAITFYTKQDSVAIKPIINVMKQSGCEVSEWMDKMAKMTRKEKESIKNGKAHKERKQ-ITTVPK 533          
The following BLAST results are available for this feature:
BLAST of CB304835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 351
Match NameE-valueIdentityDescription
RH57_ARATH1.917e-4382.65DEAD-box ATP-dependent RNA helicase 57 OS=Arabidop... [more]
RH57_ORYSJ2.864e-3976.77DEAD-box ATP-dependent RNA helicase 57 OS=Oryza sa... [more]
DDX52_HUMAN2.780e-2657.28Probable ATP-dependent RNA helicase DDX52 OS=Homo ... [more]
DDX52_BOVIN3.631e-2656.31Probable ATP-dependent RNA helicase DDX52 OS=Bos t... [more]
DDX52_RAT4.743e-2656.31Probable ATP-dependent RNA helicase DDX52 OS=Rattu... [more]
ROK1_SCHPO8.090e-2652.94ATP-dependent RNA helicase rok1 OS=Schizosaccharom... [more]
DDX52_MOUSE8.090e-2650.44Probable ATP-dependent RNA helicase DDX52 OS=Mus m... [more]
ROK1_CANGA1.057e-2555.66ATP-dependent RNA helicase ROK1 OS=Candida glabrat... [more]
ROK1_YEAST5.244e-2554.72ATP-dependent RNA helicase ROK1 OS=Saccharomyces c... [more]
ROK1_YEAS75.244e-2554.72ATP-dependent RNA helicase ROK1 OS=Saccharomyces c... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_F11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_F11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304835 ID=CB304835; Name=CB304835; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAACAATAAATAAATAAAT
CATCCTCAAACAAGTAAATGATTCCAGAATTTTTCTGGTCCTATGAGAAT
ATAAGGGATTTTTTGTTCTGTGGTTGTATCACTAGCTTATGTAAAACCGT
GGAAATTTATGCTTCTTTTATGGATGGTGTTGGCCTTGTAGCTGGCTGGA
TGTCAAAAATAGATTGAACCAATGAGAACCCAGACAGTGTCTGGAACTGG
AACAGTACTAGTTTCTATGGACTTGATAAAGGAAACAAATAAAGCCAACA
ACAAAAAACTCTTTCAAGAAAAATGAAGGTGATTTGCAGCTTTACTCTTC
ACCATCTTTTGGTTTGGTTGAAATTGATTCTCTTCGTGGCCGATGCTTCT
TACCCTTCAGTTTTGGCAAGGTCAAGATCCAGGATGGAACCTCGCAACCA
GAGGCTTTCATTAAATTAGCTATGTTACGCAAAAATGGAATATCGTCTTC
AGTGTAAAGTGTTATCGCTTCTCCACTCCTACCTGCCCTGCCAGTGCGAC
CTATTCTGTGAATGTATGCAGCACCAGAATCGGGGAAGTCATAATTAATC
ACGCAGTTTACACCCTTGAAATCCATGCCTCGGGCAATAACATCAGTGGC
A
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