CB304836

Overview
NameCB304836
Unique NameCB304836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9763 contig Csv1_Contig9763:374..1035. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304836 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 3.703e-42
Identity = 94/142 (66.20%), Postives = 104/142 (73.24%), Query Frame = -2
Query:  236 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPPLQIGYQPADPISVVTAGPSLNNYMQGWLP 661
            GE+LGPLNSKELESLERQLDMSLKQIRSTRTQ MLD L +LQ KE  L+EAN+TLKQR             LMEG  +N LQ   +A+D GYG +  Q QGD FFH LECEP LQIGYQ  DPI+V  AGPS+NNYM GWLP
Sbjct:  115 GEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLQDLQRKEHALNEANRTLKQR-------------LMEGSTLN-LQWQQNAQDVGYGRQATQTQGDGFFHPLECEPTLQIGYQ-NDPITVGGAGPSVNNYMAGWLP 241          
BLAST of CB304836 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.191e-40
Identity = 90/145 (62.07%), Postives = 102/145 (70.34%), Query Frame = -2
Query:  236 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGL-KPAQPQGDSFFHA--LECEPPLQIGYQPADPISVVTAGPSLNNYMQGWLP 661
            GE+LGPL+SK+LE+LERQLD SLKQIRSTRTQ+MLD L +LQ KE LL EAN+ L+QR              MEGYQ+N+LQLN SAED GYG        GD  F    +ECEP LQIGY   DP SVVTAGPS+NNYM GWLP
Sbjct:  117 GEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQR--------------MEGYQINSLQLNLSAEDMGYGRHHQGHTHGDELFQVQPIECEPTLQIGYHQGDPGSVVTAGPSMNNYMGGWLP 247          
BLAST of CB304836 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.252e-31
Identity = 80/145 (55.17%), Postives = 98/145 (67.59%), Query Frame = -2
Query:  236 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCG-YGLKPAQPQ--GDSFFHALECEPPLQIGYQPADPISVVTAGPSLNNYMQGWLP 661
            GE+LGPL++KELESLERQLD SLKQIR+ RTQ+MLD L +LQ KE++L+E NKTL+             L+L +GYQ+  LQLNP+ E+   YG    Q Q    +FF  LECEP LQIGYQ       + AGPS+NNYM GWLP
Sbjct:  117 GEDLGPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLR-------------LRLADGYQM-PLQLNPNQEEVDHYGRHHHQQQQHSQAFFQPLECEPILQIGYQGQQ--DGMGAGPSVNNYMLGWLP 245          
BLAST of CB304836 vs. ExPASy Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.552e-31
Identity = 78/144 (54.17%), Postives = 95/144 (65.97%), Query Frame = -2
Query:  239 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQL-NPS-AEDCGYGLKPAQPQGDSFFHALECEPPLQIGYQPADPISVVTAGPSLNNYM-QGWL 661
            GE+LGPL SKELE LERQLD SL+QIRSTRTQ+MLD L +LQ +EQ+L EANKTLK+R               E  Q N  Q+ +PS     GYG +PAQ  G++F+H LECEP LQIGY     ++  TA  ++NNYM  GWL
Sbjct:  113 GEDLGPLGSKELEQLERQLDSSLRQIRSTRTQFMLDQLADLQRREQMLCEANKTLKRR-------------FEESSQANQQQVWDPSNTHAVGYGRQPAQHHGEAFYHPLECEPTLQIGYHSDITMATATAS-TVNNYMPPGWL 242          
BLAST of CB304836 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.118e-30
Identity = 80/147 (54.42%), Postives = 97/147 (65.99%), Query Frame = -2
Query:  236 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAED--CGYGLKPAQPQGDS---FFHALECEPPLQIGYQPADPISVVTAGPSLNNYMQGWLP 661
            GE+LGPL++KELE LERQLD SLKQIR+ RTQ+MLD L +LQ KE++L+E NKTL+             L+L +GYQ+  LQLNP+ ED    YG    Q Q +S   FF  LECEP LQ+GYQ       + AGPS NNYM GWLP
Sbjct:  117 GEDLGPLSTKELELLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLNETNKTLR-------------LRLADGYQM-PLQLNPNQEDHHVDYGRHDQQQQQNSHHAFFQPLECEPILQMGYQGQQDHG-MEAGPSENNYMLGWLP 248          
BLAST of CB304836 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.771e-23
Identity = 54/79 (68.35%), Postives = 59/79 (74.68%), Query Frame = -2
Query:  425 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVN 661
            GE+LGPLNSKELESLERQLDMSLKQIRSTRTQ MLD LT+ Q KE  L+EAN+TLKQR             LMEG Q+N
Sbjct:  115 GEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLTDYQRKEHALNEANRTLKQR-------------LMEGSQLN 180          

HSP 2 Score: 31.187 bits (69), Expect = 1.771e-23
Identity = 16/31 (51.61%), Postives = 19/31 (61.29%), Query Frame = -3
Query:  313 VQKIVVMGLNQLNLRAIASFTPWNVNPHCKL 405
            + K+  M   QL LRA+ASF  W VN  CKL
Sbjct:  186 MHKLWAMAGKQLKLRAMASFILWIVNLLCKL 216          
BLAST of CB304836 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.604e-21
Identity = 63/149 (42.28%), Postives = 87/149 (58.39%), Query Frame = -2
Query:  239 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR---TMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPPLQIGYQP---ADPISVVTAGPSL--NNYMQGWL 661
            GE+LGPLNSKELE LERQLD SLKQ+R  +TQYMLD L++LQ KE +L +AN+ L  +    + +RH    G     G++          ++  YG   A  QG   + +LEC+P LQIGY     ++ ++V   G S   N Y+ GW+
Sbjct:  114 GEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLDANRALSMKLEDMIGVRHHHIGG-----GWE------GGDQQNIAYGHPQAHSQG--LYQSLECDPTLQIGYSHPVCSEQMAVTVQGQSQQGNGYIPGWM 249          
BLAST of CB304836 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.788e-20
Identity = 64/149 (42.95%), Postives = 84/149 (56.38%), Query Frame = -2
Query:  239 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR---TMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPPLQIGYQP---ADPISVVTAGPSL--NNYMQGWL 661
            GE+LGPLNSKELE LERQLD SLKQ+RS +TQYMLD L++LQ+KEQ+L E N+ L  +    + +R     G    EG + N            Y    AQ QG   +  LEC P LQ+GY     ++ I+  T   +   N Y+ GW+
Sbjct:  114 GEDLGPLNSKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKEQMLLETNRALAMKLDDMIGVRSHHMGGGGGWEGGEQNVT----------YAHHQAQSQG--LYQPLECNPTLQMGYDNPVCSEQITATTQAQAQQGNGYIPGWM 250          
BLAST of CB304836 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSJ (MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.051e-20
Identity = 62/145 (42.76%), Postives = 87/145 (60.00%), Query Frame = -2
Query:  236 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLME-GYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALEC--EPPLQIGYQPADPISVVTAGPSLNNYMQGWLP 661
            GE+L  L  KELESLE+QLD SLK +R+TRT++++D LTELQ KEQ++SEAN+ L+++     H    G Q+ E G  +   +  P  +   +G       G+ FFH L+   EP LQIGY PA+    + +   +N YM  WLP
Sbjct:  116 GEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHV--RGQQVWEQGCNLIGYERQPEVQQPLHG-------GNGFFHPLDAAGEPTLQIGY-PAEHHEAMNSA-CMNTYMPPWLP 249          
BLAST of CB304836 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSI (MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.051e-20
Identity = 62/145 (42.76%), Postives = 87/145 (60.00%), Query Frame = -2
Query:  236 GEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLME-GYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALEC--EPPLQIGYQPADPISVVTAGPSLNNYMQGWLP 661
            GE+L  L  KELESLE+QLD SLK +R+TRT++++D LTELQ KEQ++SEAN+ L+++     H    G Q+ E G  +   +  P  +   +G       G+ FFH L+   EP LQIGY PA+    + +   +N YM  WLP
Sbjct:  116 GEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHV--RGQQVWEQGCNLIGYERQPEVQQPLHG-------GNGFFHPLDAAGEPTLQIGY-PAEHHEAMNSA-CMNTYMPPWLP 249          
The following BLAST results are available for this feature:
BLAST of CB304836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
AGL9_PETHY3.703e-4266.20Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]
MTF1_PEA1.191e-4062.07MADS-box transcription factor 1 OS=Pisum sativum G... [more]
SEP3_ARATH2.252e-3155.17Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
AGL9_ARADE6.552e-3154.17Agamous-like MADS-box protein AGL9 homolog OS=Aran... [more]
AGL9_SINAL1.118e-3054.42Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]
AGL9_SOLLC1.771e-2368.35Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]
SEP2_ARATH3.604e-2142.28Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]
SEP1_ARATH1.788e-2042.95Developmental protein SEPALLATA 1 OS=Arabidopsis t... [more]
MADS7_ORYSJ3.051e-2042.76MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MADS7_ORYSI3.051e-2042.76MADS-box transcription factor 7 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_F12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_F12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304836 ID=CB304836; Name=CB304836; organism=Citrus sinensis; type=EST; length=662bp
TTTTTTTTTTTTTTTTTTNNNTTTTTTTTTCGAAAATACACGCACACACA
ACATAGCTATATATCGTCATCAGTTTCCCTAAAGGGCAGGATCACTGTAG
AGTTATTATAATAAATCCTTATGATTGCGTGTTCCTAGTCACTGAATAGG
GTTGCTTACAAAGGGATACAAAGTTGCTGATTCTTATGGATCAACTACAA
TACATTGACTGGTAATGCCCGCCGCTCTCTTAGCATGGTAGCCATCCTTG
CATGTAATTATTCAAACTCGGGCCTGCTGTGACAACCGATATTGGGTCCG
CAGGCTGGTATCCAATTTGCAATGGGGGTTCACATTCCAAGGCGTGAAAG
AAGCTATCGCCCTGAGGTTGAGCTGGTTTAAGCCCATAACCACAATCTTC
TGCACTAGGATTCAATTGAAGTGTGTTCACTTGGTATCCCTCCATCAACT
GCAAACCAGCAAAAGCGGCGTGCCTTAGCGTCATCGTCCTTTGTTTGAGG
GTCTTATTTGCTTCGCTCAGCAACTGTTCCTTATGTTGCAGTTCAGTAAG
GGTATCCAGCATGTACTGAGTTCTTGTTGATCTGATCTGCTTCAATGACA
TATCAAGCTGCCTTTCAAGTGACTCAAGCTCTTTGCTGTTTAGAGGGCCA
AGTTCTTCTCCA
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