CB304844

Overview
NameCB304844
Unique NameCB304844
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304844_ssr570 microsatellite CB304844_ssr570:570..584. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2614 contig Csv1_Contig2614:121..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304844 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.808e-23
Identity = 46/66 (69.70%), Postives = 54/66 (81.82%), Query Frame = -3
Query:  309 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPPCACVNCTCG 506
            MSDTCGNCDCAD++QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGP C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CB304844 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.027e-18
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = -3
Query:  306 TCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPPCACVNCTCGS 497
            TCGNCDC D+SQCVKKG+SY  D VET+ S+V  V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of CB304844 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.751e-18
Identity = 44/65 (67.69%), Postives = 48/65 (73.85%), Query Frame = -3
Query:  312 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPPCACVNCTC 506
            MSD CGNCDCAD SQCVKKG+S   D VETD S++   VVM V AAE+ G CKCG  C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNS--IDIVETDKSYIED-VVMGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CB304844 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.796e-16
Identity = 38/65 (58.46%), Postives = 44/65 (67.69%), Query Frame = -3
Query:  312 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPPCACVNCTC 506
            MS  C NCDC+D SQC KKG S+    VET+   + TV+ MD  AAE  GNCKCGP CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of CB304844 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.796e-16
Identity = 39/66 (59.09%), Postives = 46/66 (69.70%), Query Frame = -3
Query:  309 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPPCACVNCTCG 506
            MS  C NCDCAD +QCVKKG+SY    VET+   + TV V D  AAE +G CKCG  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of CB304844 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.812e-15
Identity = 36/66 (54.55%), Postives = 42/66 (63.64%), Query Frame = -3
Query:  309 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPPCACVNCTCG 506
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG  C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CB304844 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.812e-15
Identity = 36/66 (54.55%), Postives = 42/66 (63.64%), Query Frame = -3
Query:  309 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPPCACVNCTCG 506
            MSD CGNCDCAD+SQCVKKG+SY    VE + S        +V A E  G CKCG  C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFE-----EVAAGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CB304844 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.944e-14
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = -3
Query:  309 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPPCACVNCTCG 506
            MSD CGNCDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
BLAST of CB304844 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.779e-13
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = -3
Query:  309 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAETEGNCKCGPPCACVNCTCG 506
            MSD CG+CDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of CB304844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA1.808e-2369.70Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC1.027e-1860.94Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE1.751e-1867.69Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_PRUAV2.796e-1658.46Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3_MALDO2.796e-1659.09Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3A_ORYSJ1.812e-1554.55Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI1.812e-1554.55Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ9.944e-1450.00Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI3.779e-1348.48Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IVaR_H09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IVaR_H09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304844 ID=CB304844; Name=CB304844; organism=Citrus sinensis; type=EST; length=592bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGACTAACAATAATACATTA
AAATTAAACCACACAAGGCCACGGTCATGGCCATGGCCATATATTACATG
ATTATGAAGAAGGAAACACAAAACATTACGAGTGATGGGTGACACAACAC
GCACATCACTCCACACACTAGTAGTAGACCATCATAAAAACGAAGTAAAG
AATTTTTCTTTTTTTTTAATCACCCTTACATTATTCTTAACCCCCACAAT
ATTTAGGCACACTTGCAGCTTCTTATTTTTTGCTGCATGTGTTTGCTTAT
TAGTGACTACCACAAGTGCAGTTCACACAAGCGCAGGGGGGGCCGCACTT
GCAGTTACCTTCAGTCTCAGCAGCCTGAACGTCCATGACAACAACGGTGC
TGACAAAGCTCAAGTCAGTCTCGACGAAGTCAGCAGCATAGCTGCTTCCC
TTCTTCACACACTGGCTCCTGTCAGCGCAGTCGCAGTTGCCGCAGGTGTC
CGACATGTTGATTGAGCTTAAAACTTGGAATTTAAAACTGGAAATAGAGG
GCTCTTTATTGTACGAAACTTGCTTTGCTTTGCTGTGATCCC
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