CB304860

Overview
NameCB304860
Unique NameCB304860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10737 contig Csv1_Contig10737:284..876. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304860 vs. ExPASy Swiss-Prot
Match: AHP5_ARATH (Histidine-containing phosphotransfer protein 5 OS=Arabidopsis thaliana GN=AHP5 PE=1 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.323e-29
Identity = 60/80 (75.00%), Postives = 70/80 (87.50%), Query Frame = -1
Query:  330 VDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRMEQQILAAGGSVP 569
            VDFKQVDS VHQLKGSSSS+GA RVKNVCI+F+  CD QNREGC+RCLQQV +EY MLK+KLQ LF +E+QIL AGG++P
Sbjct:   73 VDFKQVDSGVHQLKGSSSSVGARRVKNVCISFKECCDVQNREGCLRCLQQVDYEYKMLKTKLQDLFNLEKQILQAGGTIP 152          
BLAST of CB304860 vs. ExPASy Swiss-Prot
Match: AHP1_ARATH (Histidine-containing phosphotransfer protein 1 OS=Arabidopsis thaliana GN=AHP1 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.559e-28
Identity = 57/86 (66.28%), Postives = 70/86 (81.40%), Query Frame = -1
Query:  330 SXRQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRMEQQILAAGGSVP 587
            S  Q  VDFK+VD HVHQLKGSSSSIGA RVKN C+ FRSFC+ QN E C RCLQQV  EY ++K++L+TLF++EQQI+A+GG +P
Sbjct:   63 SLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEACHRCLQQVKQEYYLVKNRLETLFKLEQQIVASGGMIP 148          
BLAST of CB304860 vs. ExPASy Swiss-Prot
Match: AHP3_ARATH (Histidine-containing phosphotransfer protein 3 OS=Arabidopsis thaliana GN=AHP3 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 6.360e-24
Identity = 52/80 (65.00%), Postives = 62/80 (77.50%), Query Frame = -1
Query:  330 VDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRMEQQILAAGGSVP 569
            VDFK V S VHQLKGSSSS+GA RVK +C+  +  CD+QN EGC+RCLQQV  EY  LK+KLQ LF +EQQI+ AGG +P
Sbjct:   72 VDFKLVGSSVHQLKGSSSSVGAKRVKGLCVTLKECCDSQNYEGCVRCLQQVDIEYKTLKAKLQDLFNLEQQIVQAGGRIP 151          
BLAST of CB304860 vs. ExPASy Swiss-Prot
Match: AHP2_ARATH (Histidine-containing phosphotransfer protein 2 OS=Arabidopsis thaliana GN=AHP2 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.851e-23
Identity = 50/80 (62.50%), Postives = 64/80 (80.00%), Query Frame = -1
Query:  330 VDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRMEQQILAAGGSVP 569
            VDF QV + VHQLKGSSSS+GA RVK +C++F+  C+A+N EGC+RCLQQV  EY  LK+KLQ +F +E+QI+ AGG VP
Sbjct:   72 VDFSQVGASVHQLKGSSSSVGAKRVKTLCVSFKECCEAKNYEGCVRCLQQVDIEYKALKTKLQDMFNLEKQIIQAGGIVP 151          
BLAST of CB304860 vs. ExPASy Swiss-Prot
Match: AHP6_ARATH (Histidine-containing phosphotransfer protein 6 OS=Arabidopsis thaliana GN=AHP6 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.517e-17
Identity = 45/80 (56.25%), Postives = 59/80 (73.75%), Query Frame = -1
Query:  330 DFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRMEQQ-ILAAGGSVP 566
            D+K++  H++QL GSSSSIGA RV+NVC+AFRS  +  NR GC+R L+ V HEY  LK+ +  LF++EQQ ILAAG   P
Sbjct:   74 DYKKIGLHLNQLVGSSSSIGARRVRNVCVAFRSASELSNRPGCLRGLEVVEHEYHYLKNMMHELFQLEQQRILAAGVRYP 153          
BLAST of CB304860 vs. ExPASy Swiss-Prot
Match: HP1_ORYSJ (Histidine-containing phosphotransfer protein 1 OS=Oryza sativa subsp. japonica GN=HP1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.191e-16
Identity = 38/77 (49.35%), Postives = 58/77 (75.32%), Query Frame = -1
Query:  348 QPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRMEQQILA 578
            QP V+F +VD++VHQLKGSS+S+GA +VK  C+ FR FC  ++R+GC+  L  V +++  L++K QT+ ++EQQI A
Sbjct:   67 QPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNKFQTMLQLEQQIQA 143          
BLAST of CB304860 vs. ExPASy Swiss-Prot
Match: AHP4_ARATH (Histidine-containing phosphotransfer protein 4 OS=Arabidopsis thaliana GN=AHP4 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.498e-14
Identity = 35/79 (44.30%), Postives = 52/79 (65.82%), Query Frame = -1
Query:  360 VGQSXRQPCVDFKQVDSHVHQLKGSSSSIGALRVKNVCIAFRSFCDAQNREGCMRCLQQVSHEYTMLKSKLQTLFRMEQ 596
            + Q+  +   DF ++DS++HQ KGSS+SIGA +VK  C  FR +C A N EGC+R  QQ+  E++ L+ KL+  F+  Q
Sbjct:   49 IDQALERGSFDFNRLDSYMHQFKGSSTSIGASKVKAECTTFREYCRAGNAEGCLRTFQQLKKEHSTLRKKLEHYFQASQ 127          
The following BLAST results are available for this feature:
BLAST of CB304860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
AHP5_ARATH1.323e-2975.00Histidine-containing phosphotransfer protein 5 OS=... [more]
AHP1_ARATH5.559e-2866.28Histidine-containing phosphotransfer protein 1 OS=... [more]
AHP3_ARATH6.360e-2465.00Histidine-containing phosphotransfer protein 3 OS=... [more]
AHP2_ARATH1.851e-2362.50Histidine-containing phosphotransfer protein 2 OS=... [more]
AHP6_ARATH1.517e-1756.25Histidine-containing phosphotransfer protein 6 OS=... [more]
HP1_ORYSJ2.191e-1649.35Histidine-containing phosphotransfer protein 1 OS=... [more]
AHP4_ARATH3.498e-1444.30Histidine-containing phosphotransfer protein 4 OS=... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_B10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_B10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304860 ID=CB304860; Name=CB304860; organism=Citrus sinensis; type=EST; length=596bp
TTTTTNNTTTTTTTTTTTTTTTTTTTTTTTATTCGGGAAGGTTCAACCTC
AGTTTTCAGATAAGATTGATCAGAAGATTCAGACCAATGAATAGAACGAC
GTTATTTGTGTGCTTTTATAGCAGAAGAAGAGATAGAAATCTTTTACTTG
CACTAACAATCTCTCCTTGTAGGATCTAAACATACATCTAATACTATCCT
TTGACATCAAATCAAAGTAGCTGGAAATCAGAACTACAAAAACTCGTTCA
TAAAGTAATTGCAATGATAAAAGATCGCTCTTCTTTCTGTTTACCAATAG
GGGGATAACATCAATGCCATTTATTCNNNAGGAACTGACCCACCAGCAGC
AAGTATTTGTTGCTCCATCCTGAATAGTGTTTGAAGCTTGCTCTTCAACA
TAGTGTACTCATGACTCACTTGTTGCAGACATCTCATACACCCTTCACGG
TTTTGGGCATCACAAAAACTTCTGAAGGCAATGCATACATTTTTAACTCT
CAGTGCACCAATGCTGGAACTACTACCCTTCAATTGATGGACATGTGAAT
CTACCTGTTTGAAATCCACACACGGTTGTCTANNGCTCTGGCCTAC
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