CB304888
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CB304888 vs. ExPASy Swiss-Prot
Match: RS29_ARATH (40S ribosomal protein S29 OS=Arabidopsis thaliana GN=RPS29A PE=3 SV=2) HSP 1 Score: 95.9005 bits (237), Expect = 1.660e-21 Identity = 39/48 (81.25%), Postives = 41/48 (85.42%), Query Frame = -1 Query: 260 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSKCQ 403 MGHSNVWNSHPK YGPGSR CRVCGN H +IRKYGL CCRQCFRS + Sbjct: 1 MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAK 48 HSP 2 Score: 26.5646 bits (57), Expect = 1.660e-21 Identity = 10/12 (83.33%), Postives = 12/12 (100.00%), Query Frame = -2 Query: 235 ANAKEIGFVKYR 270 +NAKEIGF+KYR Sbjct: 45 SNAKEIGFIKYR 56
BLAST of CB304888 vs. ExPASy Swiss-Prot
Match: RS29_WHEAT (40S ribosomal protein S29 OS=Triticum aestivum GN=RPS29 PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.364e-20 Identity = 39/45 (86.67%), Postives = 40/45 (88.89%), Query Frame = -1 Query: 269 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRS 403 MGHSNVWNSHPK YG GSR CRVCGN H +IRKYGLMCCRQCFRS Sbjct: 1 MGHSNVWNSHPKNYGAGSRVCRVCGNSHGLIRKYGLMCCRQCFRS 45 HSP 2 Score: 23.483 bits (49), Expect = 1.364e-20 Identity = 8/12 (66.67%), Postives = 12/12 (100.00%), Query Frame = -2 Query: 235 ANAKEIGFVKYR 270 ++AK+IGF+KYR Sbjct: 45 SDAKDIGFIKYR 56
BLAST of CB304888 vs. ExPASy Swiss-Prot
Match: RS29_GRIJA (40S ribosomal protein S29 OS=Griffithsia japonica GN=RPS29 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 9.021e-15 Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = -1 Query: 272 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFR 403 MGH N+W SHP+ YG GSR+C++CGN H +IRKY + CRQCFR Sbjct: 1 MGHQNIWYSHPRKYGKGSRSCKICGNKHGLIRKYSMNICRQCFR 44 HSP 2 Score: 22.7126 bits (47), Expect = 9.021e-15 Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = -2 Query: 235 AKEIGFVKYR 264 AK+IGF+KYR Sbjct: 47 AKDIGFIKYR 56
BLAST of CB304888 vs. ExPASy Swiss-Prot
Match: RS29_IXOSC (40S ribosomal protein S29 OS=Ixodes scapularis GN=RpS29 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.060e-14 Identity = 31/44 (70.45%), Postives = 35/44 (79.55%), Query Frame = -1 Query: 272 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFR 403 MGH N+W SHP+ YGPGSR CRVC N H +IRKYGL CR+CFR Sbjct: 1 MGHENIWYSHPRKYGPGSRYCRVCANHHGLIRKYGLNICRRCFR 44
BLAST of CB304888 vs. ExPASy Swiss-Prot
Match: RS29_GUITH (40S ribosomal protein S29A OS=Guillardia theta GN=rps29A PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.060e-14 Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = -1 Query: 260 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSKCQ 403 M H N+WN H +TYG GSR CR+CGN +IRKYGL CRQCFR K Q Sbjct: 1 MSHKNIWNKHSRTYGKGSRGCRICGNRSGLIRKYGLSICRQCFREKSQ 48
BLAST of CB304888 vs. ExPASy Swiss-Prot
Match: RS29_SPOFR (40S ribosomal protein S29 OS=Spodoptera frugiperda GN=RpS29 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 3.084e-14 Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = -1 Query: 272 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFR 403 MGH+N+W SHP+ YG GSR+CR C N H +IRKYGL CRQCFR Sbjct: 1 MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFR 44
BLAST of CB304888 vs. ExPASy Swiss-Prot
Match: RS29_PLUXY (40S ribosomal protein S29 OS=Plutella xylostella GN=RpS29 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 3.084e-14 Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = -1 Query: 272 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFR 403 MGH+N+W SHP+ YG GSR+CR C N H +IRKYGL CRQCFR Sbjct: 1 MGHANIWYSHPRKYGQGSRSCRACSNRHGLIRKYGLNICRQCFR 44
BLAST of CB304888 vs. ExPASy Swiss-Prot
Match: RS29_SCALT (40S ribosomal protein S29 OS=Scarabaeus laticollis GN=RpS29 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 4.028e-14 Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = -1 Query: 272 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFR 403 MGH N+W SHP+ YG GSR+CR C N H +IRKYGL CRQCFR Sbjct: 1 MGHQNIWYSHPRKYGQGSRSCRACSNRHGLIRKYGLNICRQCFR 44
BLAST of CB304888 vs. ExPASy Swiss-Prot
Match: RS29_BOMMO (40S ribosomal protein S29 OS=Bombyx mori GN=RpS29 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 5.260e-14 Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = -1 Query: 272 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFR 403 MGH+N+W SHP+ YG GSR+CR C N H +IRKYGL CRQCFR Sbjct: 1 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFR 44
BLAST of CB304888 vs. ExPASy Swiss-Prot
Match: RS29_LONON (40S ribosomal protein S29 OS=Lonomia obliqua GN=RpS29 PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13 Identity = 29/44 (65.91%), Postives = 34/44 (77.27%), Query Frame = -1 Query: 272 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFR 403 MGH+N+W SHP+ Y GSR+CR C N H +IRKYGL CRQCFR Sbjct: 1 MGHANIWYSHPRRYCQGSRSCRACSNRHGLIRKYGLNICRQCFR 44 The following BLAST results are available for this feature:
BLAST of CB304888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 27
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Sequences
The
following sequences are available for this feature:
EST sequence >CB304888 ID=CB304888; Name=CB304888; organism=Citrus sinensis; type=EST; length=499bpback to top |