CB304888

Overview
NameCB304888
Unique NameCB304888
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length499
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12982 contig Csv1_Contig12982:1..481. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304888 vs. ExPASy Swiss-Prot
Match: RS29_ARATH (40S ribosomal protein S29 OS=Arabidopsis thaliana GN=RPS29A PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.660e-21
Identity = 39/48 (81.25%), Postives = 41/48 (85.42%), Query Frame = -1
Query:  260 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSKCQ 403
            MGHSNVWNSHPK YGPGSR CRVCGN H +IRKYGL CCRQCFRS  +
Sbjct:    1 MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAK 48          

HSP 2 Score: 26.5646 bits (57), Expect = 1.660e-21
Identity = 10/12 (83.33%), Postives = 12/12 (100.00%), Query Frame = -2
Query:  235 ANAKEIGFVKYR 270
            +NAKEIGF+KYR
Sbjct:   45 SNAKEIGFIKYR 56          
BLAST of CB304888 vs. ExPASy Swiss-Prot
Match: RS29_WHEAT (40S ribosomal protein S29 OS=Triticum aestivum GN=RPS29 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.364e-20
Identity = 39/45 (86.67%), Postives = 40/45 (88.89%), Query Frame = -1
Query:  269 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRS 403
            MGHSNVWNSHPK YG GSR CRVCGN H +IRKYGLMCCRQCFRS
Sbjct:    1 MGHSNVWNSHPKNYGAGSRVCRVCGNSHGLIRKYGLMCCRQCFRS 45          

HSP 2 Score: 23.483 bits (49), Expect = 1.364e-20
Identity = 8/12 (66.67%), Postives = 12/12 (100.00%), Query Frame = -2
Query:  235 ANAKEIGFVKYR 270
            ++AK+IGF+KYR
Sbjct:   45 SDAKDIGFIKYR 56          
BLAST of CB304888 vs. ExPASy Swiss-Prot
Match: RS29_GRIJA (40S ribosomal protein S29 OS=Griffithsia japonica GN=RPS29 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.021e-15
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = -1
Query:  272 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFR 403
            MGH N+W SHP+ YG GSR+C++CGN H +IRKY +  CRQCFR
Sbjct:    1 MGHQNIWYSHPRKYGKGSRSCKICGNKHGLIRKYSMNICRQCFR 44          

HSP 2 Score: 22.7126 bits (47), Expect = 9.021e-15
Identity = 8/10 (80.00%), Postives = 10/10 (100.00%), Query Frame = -2
Query:  235 AKEIGFVKYR 264
            AK+IGF+KYR
Sbjct:   47 AKDIGFIKYR 56          
BLAST of CB304888 vs. ExPASy Swiss-Prot
Match: RS29_IXOSC (40S ribosomal protein S29 OS=Ixodes scapularis GN=RpS29 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.060e-14
Identity = 31/44 (70.45%), Postives = 35/44 (79.55%), Query Frame = -1
Query:  272 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFR 403
            MGH N+W SHP+ YGPGSR CRVC N H +IRKYGL  CR+CFR
Sbjct:    1 MGHENIWYSHPRKYGPGSRYCRVCANHHGLIRKYGLNICRRCFR 44          
BLAST of CB304888 vs. ExPASy Swiss-Prot
Match: RS29_GUITH (40S ribosomal protein S29A OS=Guillardia theta GN=rps29A PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.060e-14
Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = -1
Query:  260 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSKCQ 403
            M H N+WN H +TYG GSR CR+CGN   +IRKYGL  CRQCFR K Q
Sbjct:    1 MSHKNIWNKHSRTYGKGSRGCRICGNRSGLIRKYGLSICRQCFREKSQ 48          
BLAST of CB304888 vs. ExPASy Swiss-Prot
Match: RS29_SPOFR (40S ribosomal protein S29 OS=Spodoptera frugiperda GN=RpS29 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.084e-14
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = -1
Query:  272 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFR 403
            MGH+N+W SHP+ YG GSR+CR C N H +IRKYGL  CRQCFR
Sbjct:    1 MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFR 44          
BLAST of CB304888 vs. ExPASy Swiss-Prot
Match: RS29_PLUXY (40S ribosomal protein S29 OS=Plutella xylostella GN=RpS29 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.084e-14
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = -1
Query:  272 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFR 403
            MGH+N+W SHP+ YG GSR+CR C N H +IRKYGL  CRQCFR
Sbjct:    1 MGHANIWYSHPRKYGQGSRSCRACSNRHGLIRKYGLNICRQCFR 44          
BLAST of CB304888 vs. ExPASy Swiss-Prot
Match: RS29_SCALT (40S ribosomal protein S29 OS=Scarabaeus laticollis GN=RpS29 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.028e-14
Identity = 30/44 (68.18%), Postives = 34/44 (77.27%), Query Frame = -1
Query:  272 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFR 403
            MGH N+W SHP+ YG GSR+CR C N H +IRKYGL  CRQCFR
Sbjct:    1 MGHQNIWYSHPRKYGQGSRSCRACSNRHGLIRKYGLNICRQCFR 44          
BLAST of CB304888 vs. ExPASy Swiss-Prot
Match: RS29_BOMMO (40S ribosomal protein S29 OS=Bombyx mori GN=RpS29 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 5.260e-14
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = -1
Query:  272 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFR 403
            MGH+N+W SHP+ YG GSR+CR C N H +IRKYGL  CRQCFR
Sbjct:    1 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFR 44          
BLAST of CB304888 vs. ExPASy Swiss-Prot
Match: RS29_LONON (40S ribosomal protein S29 OS=Lonomia obliqua GN=RpS29 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.410e-13
Identity = 29/44 (65.91%), Postives = 34/44 (77.27%), Query Frame = -1
Query:  272 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFR 403
            MGH+N+W SHP+ Y  GSR+CR C N H +IRKYGL  CRQCFR
Sbjct:    1 MGHANIWYSHPRRYCQGSRSCRACSNRHGLIRKYGLNICRQCFR 44          
The following BLAST results are available for this feature:
BLAST of CB304888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RS29_ARATH1.660e-2181.2540S ribosomal protein S29 OS=Arabidopsis thaliana ... [more]
RS29_WHEAT1.364e-2086.6740S ribosomal protein S29 OS=Triticum aestivum GN=... [more]
RS29_GRIJA9.021e-1563.6440S ribosomal protein S29 OS=Griffithsia japonica ... [more]
RS29_IXOSC1.060e-1470.4540S ribosomal protein S29 OS=Ixodes scapularis GN=... [more]
RS29_GUITH1.060e-1464.5840S ribosomal protein S29A OS=Guillardia theta GN=... [more]
RS29_SPOFR3.084e-1468.1840S ribosomal protein S29 OS=Spodoptera frugiperda... [more]
RS29_PLUXY3.084e-1468.1840S ribosomal protein S29 OS=Plutella xylostella G... [more]
RS29_SCALT4.028e-1468.1840S ribosomal protein S29 OS=Scarabaeus laticollis... [more]
RS29_BOMMO5.260e-1468.1840S ribosomal protein S29 OS=Bombyx mori GN=RpS29 ... [more]
RS29_LONON3.410e-1365.9140S ribosomal protein S29 OS=Lonomia obliqua GN=Rp... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_F01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_F01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304888 ID=CB304888; Name=CB304888; organism=Citrus sinensis; type=EST; length=499bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGGGAATGATTAAGCCTT
AATAAGAATGATCAATGATATTCTTAGTCCAACAATTGCTTTGTCAAACA
TTGAATCAATTTAAGACAAAACATCGCTTAACAATCCTTGAGAAACAGAA
ATTCGCTACAGGTATCACAGATAAACAAAATCAGCATGGTACTGGTAACC
CCCCTTCTGATGTTGACAACATGTTAATCATTTAGCGGTACTTAACAAAA
CCAATCTCCTTGGCATTTGCTACGGAAGCATTGTCTGCAGCACATGAGCC
CATACTTCCTGATTATTGCATGAGGATTCCCACAAACCCGGCAAGCGCGA
GAACCGGGGCCGTAAGTCTTGGGGTGAGAGTTCCAAACGTTGGAGTGACC
CATGATTGATTGTTTTCTCCTTCCTTGACAAAAAGAAAAGCCGGTTCGCT
TAAGCTTGTGTAAAACCCTAAAATCTGCTGAGGAATTTCAACGAATCCC
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