CB304909

Overview
NameCB304909
Unique NameCB304909
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9203 contig Csv1_Contig9203:447..1060. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304909 vs. ExPASy Swiss-Prot
Match: FA18_ARATH (Uncharacterized FAM18-like protein At1g09330 OS=Arabidopsis thaliana GN=At1g09330 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 8.112e-54
Identity = 96/112 (85.71%), Postives = 106/112 (94.64%), Query Frame = -2
Query:  278 VGLRWWNEINDMGESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCQKDAKKQIQQFASQTIASRFTSTLQSA 613
            VGLRWWNEIND+GESVWKFE LD ES+ARMNKKDSWLFWWTLYL+A AW +LG+FSLIRFQADYLLVVGVCL+L++ANIIGFTKC+KDAKKQ QQFASQTIASRF ST+QSA
Sbjct:   71 VGLRWWNEINDLGESVWKFESLDQESLARMNKKDSWLFWWTLYLAAAAWFILGVFSLIRFQADYLLVVGVCLSLNVANIIGFTKCKKDAKKQFQQFASQTIASRFQSTVQSA 182          
BLAST of CB304909 vs. ExPASy Swiss-Prot
Match: TVP23_DEBHA (Golgi apparatus membrane protein TVP23 OS=Debaryomyces hansenii GN=TVP23 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.768e-16
Identity = 47/117 (40.17%), Postives = 66/117 (56.41%), Query Frame = -2
Query:  281 VGLRWWNEI------NDMGESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCQKDAKKQIQQFASQTIASRFTSTLQS 613
            VGLRWWNE+      N   E+VW FE +D      +N  DS +FW  LY+   AW+VLG  +L++F+  YLL++ + ++LS+ N + FTKC K  K       +  I SR T  L S
Sbjct:  109 VGLRWWNEVSVIKSTNGEFENVWVFETVDPNRY--INPIDSKVFWTLLYVQPAAWVVLGFLALLKFEFLYLLLIIISISLSLTNAMAFTKCDKFGK---ANHLATDIFSRATGNLFS 220          
BLAST of CB304909 vs. ExPASy Swiss-Prot
Match: TVP23_PICGU (Golgi apparatus membrane protein TVP23 OS=Pichia guilliermondii GN=TVP23 PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.332e-15
Identity = 48/116 (41.38%), Postives = 64/116 (55.17%), Query Frame = -2
Query:  302 VGLRWWNEINDMG-------ESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCQKDAKKQ-----IQQFASQTIASR 613
            VGLRWWNE+N +        E+VW FE  D      +N  DS +FW  LY   VAWIVLGI ++++F+  YL+++ + + LS  N + FTKC K  K           AS TI SR
Sbjct:  116 VGLRWWNEVNFIESSSTGEFENVWVFESADPSRY--INPIDSKVFWTLLYGQPVAWIVLGILAVLKFEFLYLILILIAIFLSFTNALAFTKCDKFGKANNLATGFLSRASGTILSR 229          
BLAST of CB304909 vs. ExPASy Swiss-Prot
Match: TVP23_YARLI (Golgi apparatus membrane protein TVP23 OS=Yarrowia lipolytica GN=TVP23 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.683e-15
Identity = 36/90 (40.00%), Postives = 58/90 (64.44%), Query Frame = -2
Query:  344 VGLRWWNEINDMGESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCQKDAK 613
            VGLRWWNE ++ GESVW FE  D +    +N  DS +FW  LY + V W+ L + +L++FQ   L++V + ++L++ N + +++C K  K
Sbjct:   67 VGLRWWNEASETGESVWVFETADPQRY--INPIDSKVFWMMLYGAPVLWVCLAVLALLKFQFLSLILVFIAVSLTVTNAMAYSRCDKFGK 154          
BLAST of CB304909 vs. ExPASy Swiss-Prot
Match: FA18_DROME (Uncharacterized FAM18-like protein CG5021 OS=Drosophila melanogaster GN=CG5021 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 5.683e-15
Identity = 39/106 (36.79%), Postives = 62/106 (58.49%), Query Frame = -2
Query:  299 VGLRWWNEINDMGESVWKFECLDHES-MARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCQKDAKKQIQQFASQTIASRF 613
            VGLRWWN ++D G S W FE  + ES  +R+NK +  +FW  L L  V W +  +F+L   +  +LL+V + + L+ AN+ G+ KC   A K +   A+  + ++F
Sbjct:   92 VGLRWWNYVDDDGVSHWVFESKNSESYQSRVNKNEQRIFWLGLILCPVFWGLFFLFALFGLKFKWLLLVMIAIALNAANLYGYVKCNYGANKDLNSAATDFVKTQF 197          
BLAST of CB304909 vs. ExPASy Swiss-Prot
Match: TVP23_SCHPO (Golgi apparatus membrane protein tvp23 OS=Schizosaccharomyces pombe GN=tvp23 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.694e-15
Identity = 45/111 (40.54%), Postives = 63/111 (56.76%), Query Frame = -2
Query:  281 VGLRWWNEINDMGESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCQKDAKKQIQQFASQTIASRFTSTLQS 613
            VGLRW NE    GES+W FE  D  S  R N  D   FW+ LYL    WI+LGI ++IRF+  +L +V V + L+  N   +++C KDAK++     + + +S F S   S
Sbjct:  102 VGLRWRNETGVDGESIWIFESAD-PSRPR-NAVDQKTFWYALYLYPFIWIILGIVAIIRFEFLWLALVAVAIGLTSVNTAAYSRCDKDAKRRWATELADSNSSGFVSRFLS 210          
BLAST of CB304909 vs. ExPASy Swiss-Prot
Match: TVP23_COCIM (Golgi apparatus membrane protein TVP23 OS=Coccidioides immitis GN=TVP23 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.694e-15
Identity = 44/111 (39.64%), Postives = 63/111 (56.76%), Query Frame = -2
Query:  287 VGLRWWNEIN-DMGESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQA-DYLLVVGVCLTLSIANIIGFTKCQKDAKKQIQQFASQTIASRFTSTL 613
            VGLRWWNE+N   G+S W FE  D  +   +N  D   FW +LY +   WI L I ++IR Q+  +L +VG+ L L++ N + F++C  D   Q   FAS  ++   TS L
Sbjct:   71 VGLRWWNEVNTSTGDSNWVFESSDPNTRT-INATDKRFFWLSLYATPALWIGLAILAIIRLQSVIWLSLVGIALILTVTNTLAFSRC--DRFSQASTFASSALSGGITSNL 178          
BLAST of CB304909 vs. ExPASy Swiss-Prot
Match: FA18A_DICDI (Uncharacterized FAM18-like protein 1 OS=Dictyostelium discoideum GN=DDB_G0276319 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.266e-14
Identity = 39/101 (38.61%), Postives = 59/101 (58.42%), Query Frame = -2
Query:  311 VGLRWWNEINDMGESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCQKDAKKQIQQFASQTI 613
            VGLRWWN+I + G + W FE +  +S  ++N  +S +FW  +     AW V  I SL      +L+V  VC  L+ AN++G+ KC KDA+K+++  A   I
Sbjct:   88 VGLRWWNQIKEDGTNNWVFESVQDKS--QVNPAESLMFWVPVLAFTAAWFVFSIISLFGLSFLWLVVEIVCFLLAGANLLGYIKCAKDARKKVKGMAQSYI 186          
BLAST of CB304909 vs. ExPASy Swiss-Prot
Match: TVP23_PICST (Golgi apparatus membrane protein TVP23 OS=Pichia stipitis GN=TVP23 PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 8.207e-14
Identity = 47/117 (40.17%), Postives = 66/117 (56.41%), Query Frame = -2
Query:  281 VGLRWWNEIN----DMGE--SVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCQKDAKKQIQQFASQTIASRFTSTLQS 613
            VGLRWWNE N    ++GE  +VW FE  D      +N  DS +FW  LY   V W+V     +++FQ  YLL++ + ++LS+ N + FTKC K  K     FA+  I SR T ++ S
Sbjct:  120 VGLRWWNETNATEGNVGEFENVWVFETADPNRY--INPIDSKVFWILLYAQPVVWMVFAFLCVLKFQFLYLLLIIIAISLSLTNAMAFTKCDKFGK--ANNFATD-IFSRATGSIFS 231          
BLAST of CB304909 vs. ExPASy Swiss-Prot
Match: TVP23_PHANO (Golgi apparatus membrane protein TVP23 OS=Phaeosphaeria nodorum GN=TVP23 PE=3 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.400e-13
Identity = 39/102 (38.24%), Postives = 57/102 (55.88%), Query Frame = -2
Query:  311 VGLRWWNEINDM-GESVWKFECLDHESMARMNKKDSWLFWWTLYLSAVAWIVLGIFSLIRFQADYLLVVGVCLTLSIANIIGFTKCQKDAKKQIQQFASQTI 613
            VGLRWWNE++   G+  W FE  D ES  + N  D   FW  LY+  V W+V+ + +L  F   +L +V + L L+I N + F++C K +  Q   FAS  +
Sbjct:   76 VGLRWWNEVDGATGDGRWVFESADPESREQ-NATDKRFFWMALYVQPVLWVVMAVVALFGFNFIWLTLVAIALVLTITNTLAFSRCDKFS--QASGFASNAM 174          
The following BLAST results are available for this feature:
BLAST of CB304909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
FA18_ARATH8.112e-5485.71Uncharacterized FAM18-like protein At1g09330 OS=Ar... [more]
TVP23_DEBHA8.768e-1640.17Golgi apparatus membrane protein TVP23 OS=Debaryom... [more]
TVP23_PICGU3.332e-1541.38Golgi apparatus membrane protein TVP23 OS=Pichia g... [more]
TVP23_YARLI5.683e-1540.00Golgi apparatus membrane protein TVP23 OS=Yarrowia... [more]
FA18_DROME5.683e-1536.79Uncharacterized FAM18-like protein CG5021 OS=Droso... [more]
TVP23_SCHPO9.694e-1540.54Golgi apparatus membrane protein tvp23 OS=Schizosa... [more]
TVP23_COCIM9.694e-1539.64Golgi apparatus membrane protein TVP23 OS=Coccidio... [more]
FA18A_DICDI1.266e-1438.61Uncharacterized FAM18-like protein 1 OS=Dictyostel... [more]
TVP23_PICST8.207e-1440.17Golgi apparatus membrane protein TVP23 OS=Pichia s... [more]
TVP23_PHANO1.400e-1338.24Golgi apparatus membrane protein TVP23 OS=Phaeosph... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0002_IaR_H07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0002_IaR_H07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304909 ID=CB304909; Name=CB304909; organism=Citrus sinensis; type=EST; length=614bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATGCCAAAAAAACTTATTG
TTCTATAAATGAATTTTTTCTGTAATTTCATTATACGAATACCAGTAACT
CCAGAAGGTTATACAAATACATCTACTAATTTGTTTTCCCATAGAGTTCA
AAAATAAGCCGATCCATACAGGCAAGTTTGTACAAGGCCACCACTCCTTT
CTCAACATATCTTCCACGAGCAAGTTTACTGGTCCACCTTACACCCAGCT
TCTCTAACTGAATCAGACAACACTGAAAGCTGACTGTAGGGTAGATGTGA
ATCGGGATGCGATGGTCTGGGAGGCAAATTGTTGGATCTGCTTCTTAGCA
TCTTTTTGGCATTTGGTAAAACCAATAATGTTTGCGATGCTGAGGGTCAA
ACAGACACCAACAACCAGGAGATAATCAGCTTGGAACCTAATGAGAGAAA
ATATCCCAAGCACAATCCAAGCAACAGCCGAAAGGTAAAGGGTCCACCAG
AATAGCCAGGAATCTTTCTTGTTCATGCGAGCCATGGACTCATGGTCAAG
GCACTCAAACTTCCACACACTCTCACCCATATCATTTATTTCATTCCACC
ACCTCAAACCAACT
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