CB304922

Overview
NameCB304922
Unique NameCB304922
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304922_ssr67 microsatellite CB304922_ssr67:67..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7528 contig Csv1_Contig7528:778..1365. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 2.947e-32
Identity = 62/71 (87.32%), Postives = 67/71 (94.37%), Query Frame = -1
Query:  391 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 603
            GFAVFMVHLATIP+ GTGINPARSLGAAVIYNKDK WDD W+FWVGP +GAAIAAFYHQ+ILRAGA+KALG
Sbjct:  214 GFAVFMVHLATIPVTGTGINPARSLGAAVIYNKDKPWDDHWIFWVGPLVGAAIAAFYHQYILRAGAIKALG 284          
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP25_ARATH (Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.026e-32
Identity = 62/71 (87.32%), Postives = 67/71 (94.37%), Query Frame = -1
Query:  391 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 603
            GFAVF+VHLATIPI GTGINPARSLGAA+IYNKDKAWD  W+FWVGPF GAAIAAFYHQF+LRAGA+KALG
Sbjct:  208 GFAVFIVHLATIPITGTGINPARSLGAAIIYNKDKAWDHHWIFWVGPFAGAAIAAFYHQFVLRAGAIKALG 278          
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.026e-32
Identity = 61/71 (85.92%), Postives = 67/71 (94.37%), Query Frame = -1
Query:  391 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 603
            GFAVFMVHLATIP+ GTGINPARSLGAAV+YNKDK WDD W+FWVGP +GAAIAAFYHQ+ILRAGA+KALG
Sbjct:  216 GFAVFMVHLATIPVTGTGINPARSLGAAVVYNKDKPWDDHWIFWVGPLLGAAIAAFYHQYILRAGAIKALG 286          
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP26_ARATH (Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.462e-31
Identity = 61/71 (85.92%), Postives = 66/71 (92.96%), Query Frame = -1
Query:  391 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 603
            GF+VFMVHLATIPI GTGINPARS GAAVIYN  KAWDDQW+FWVGPF+GAAIAAFYHQF+LRAGA+KA G
Sbjct:  208 GFSVFMVHLATIPITGTGINPARSFGAAVIYNNQKAWDDQWIFWVGPFVGAAIAAFYHQFVLRAGAMKAYG 278          
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.258e-31
Identity = 62/71 (87.32%), Postives = 65/71 (91.55%), Query Frame = -1
Query:  391 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 603
            GFAVFMVHLATIPI GTGINPARS GAAVIYN +KAWDDQW+FWVGP IGAA AAFYHQFILRA A+KALG
Sbjct:  209 GFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPMIGAAAAAFYHQFILRAAAIKALG 279          
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.617e-30
Identity = 59/71 (83.10%), Postives = 67/71 (94.37%), Query Frame = -1
Query:  391 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 603
            GFAVFMVHLATIPI GTGINPARS+GAAVI+N +KAW + W+FWVGPF+GAAIAAFYHQ+ILRAGA+KALG
Sbjct:  214 GFAVFMVHLATIPITGTGINPARSIGAAVIFNNEKAWHNHWIFWVGPFVGAAIAAFYHQYILRAGAIKALG 284          
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP22_ARATH (Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 3.602e-30
Identity = 60/71 (84.51%), Postives = 63/71 (88.73%), Query Frame = -1
Query:  391 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 603
            GFAVFMVHLATIPI GTGINPARS GAAVIYNK K WDD W+FWVGPFIGAAIAAFYHQF+LRA   K+LG
Sbjct:  207 GFAVFMVHLATIPITGTGINPARSFGAAVIYNKSKPWDDHWIFWVGPFIGAAIAAFYHQFVLRASGSKSLG 277          
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP21_ARATH (Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.602e-30
Identity = 60/71 (84.51%), Postives = 63/71 (88.73%), Query Frame = -1
Query:  391 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVKALG 603
            GFAVFMVHLATIPI GTGINPARS GAAVIYNK K WDD W+FWVGPFIGAAIAAFYHQF+LRA   K+LG
Sbjct:  209 GFAVFMVHLATIPITGTGINPARSFGAAVIYNKSKPWDDHWIFWVGPFIGAAIAAFYHQFVLRASGSKSLG 279          
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.144e-30
Identity = 60/68 (88.24%), Postives = 63/68 (92.65%), Query Frame = -1
Query:  400 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVK 603
            GFAVFMVHLATIPI GTGINPARSLGAAVIYNKDKAWDDQW+FWVGP IGAAIAA YHQ++LRA A K
Sbjct:  213 GFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRASATK 280          
BLAST of CB304922 vs. ExPASy Swiss-Prot
Match: PIP23_MAIZE (Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 6.144e-30
Identity = 60/68 (88.24%), Postives = 63/68 (92.65%), Query Frame = -1
Query:  400 GFAVFMVHLATIPIPGTGINPARSLGAAVIYNKDKAWDDQWLFWVGPFIGAAIAAFYHQFILRAGAVK 603
            GFAVFMVHLATIPI GTGINPARSLGAAVIYNKDKAWDDQW+FWVGP IGAAIAA YHQ++LRA A K
Sbjct:  214 GFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRASATK 281          
The following BLAST results are available for this feature:
BLAST of CB304922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
PIP21_MAIZE2.947e-3287.32Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
PIP25_ARATH5.026e-3287.32Probable aquaporin PIP2-5 OS=Arabidopsis thaliana ... [more]
PIP22_MAIZE5.026e-3285.92Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]
PIP26_ARATH1.462e-3185.92Probable aquaporin PIP2-6 OS=Arabidopsis thaliana ... [more]
PIP24_ARATH3.258e-3187.32Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
PIP21_ORYSJ1.617e-3083.10Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
PIP22_ARATH3.602e-3084.51Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2... [more]
PIP21_ARATH3.602e-3084.51Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1... [more]
PIP24_MAIZE6.144e-3088.24Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]
PIP23_MAIZE6.144e-3088.24Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_B07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_B07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304922 ID=CB304922; Name=CB304922; organism=Citrus sinensis; type=EST; length=603bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTATTCATCTAATAATTTTTTTTTT
TTCCTTAAAGCACAACAATAATAATAATAATCACATACGGAGAAAATAAT
ACAAAGTAGAAAGAGACAGAAACATTGAAGAAGTGAATTCTAAGGAAAGT
GCTTGAAAACAACAGAGGGGATTACAAAAAAGCAAGCCCCCTCATTGTCT
AAGAGACTTTTTGCCTACAACTCCTTGAAAGCACAAATCACACCCCCCCT
CATTATTCACTTTTTGAAACTTAACACACCTCTACTCCTTCCCAGTTTTT
TCTTTCCAATTTTAAATCATTAACCCCATGAAGATGTGGATAATCCACTT
GTCGAAACTAAAATCAGACACGGGATTGGCTCCTGAATGAACCAAGAGCC
TTGACAGCTCCAGCTCTCAAGATGAATTGGTGGTAGAAAGCCGCAATTGC
TGCACCGATGAAGGGTCCAACCCAGAAGAGCCATTGATCATCCCAAGCCT
TGTCCTTGTTGTAAATAACAGCGGCCCCGAGACTCCTTGCTGGGTTAATG
CCAGTGCCAGGGATTGGGATTGTGGCCAAGTGTACCATGAACACAGCAAA
TCC
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