CB304928

Overview
NameCB304928
Unique NameCB304928
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304928_ssr49 microsatellite CB304928_ssr49:49..63. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12937 contig Csv1_Contig12937:23..571. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304928 vs. ExPASy Swiss-Prot
Match: NLTP_VIGUN (Probable non-specific lipid-transfer protein AKCS9 OS=Vigna unguiculata PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.426e-23
Identity = 42/70 (60.00%), Postives = 55/70 (78.57%), Query Frame = -1
Query:  216 EAATCNPTELSPCAPAITSSAPPSRACCNKMRQQRPCLCGFLRDPNLKQYVNSPNAKRVIATCGIPYPRC 425
            EA TCNPTELS C PAIT  + PS  CC+K++ Q PCLC ++++P+LKQYVNSP AK+V++ CG+ YP C
Sbjct:   30 EAVTCNPTELSSCVPAITGGSKPSSTCCSKLKVQEPCLCNYIKNPSLKQYVNSPGAKKVLSNCGVTYPNC 99          
BLAST of CB304928 vs. ExPASy Swiss-Prot
Match: NLTP2_PRUAR (Non-specific lipid-transfer protein 2 OS=Prunus armeniaca PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.188e-21
Identity = 38/67 (56.72%), Postives = 53/67 (79.10%), Query Frame = -1
Query:  216 TCNPTELSPCAPAITSSAPPSRACCNKMRQQRPCLCGFLRDPNLKQYVNSPNAKRVIATCGIPYPRC 416
            TC+P +LSPC   I S AP    CC K+R+QRPCLCG+L++P+L+QYVNSPNA+++ + CG+P P+C
Sbjct:    2 TCSPVQLSPCLGPINSGAPSPTTCCQKLREQRPCLCGYLKNPSLRQYVNSPNARKLASNCGVPVPQC 68          
BLAST of CB304928 vs. ExPASy Swiss-Prot
Match: NLTP2_MAIZE (Probable non-specific lipid-transfer protein 2 OS=Zea mays PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.485e-15
Identity = 36/70 (51.43%), Postives = 46/70 (65.71%), Query Frame = -1
Query:  216 AATCNPTELSPCA-PAITSSAPPSRACCNKMRQQRPCLCGFLRDPNLKQYVNSPNAKRVIATCGIPYPRC 422
            A  CNP +L+PCA PA+   A P  ACC ++R Q+ CLCG+ R PN   Y+ SPNA R+ A C +P PRC
Sbjct:    1 ANPCNPAQLTPCAGPALFGGAVPP-ACCAQLRAQQGCLCGYARSPNYGSYIRSPNAARLFAICNLPMPRC 69          
BLAST of CB304928 vs. ExPASy Swiss-Prot
Match: NLTPX_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP-2 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 7.650e-15
Identity = 32/68 (47.06%), Postives = 46/68 (67.65%), Query Frame = -1
Query:  216 ATCNPTELSPCAPAITSSAPPSRACCNKMRQQRPCLCGFLRDPNLKQYVNSPNAKRVIATCGIPYPRC 419
            A+CN  +L+ CA AI   A P+ ACC+ +R Q+ C C F +DP   +YVNSPNA++ +++CGI  P C
Sbjct:   28 ASCNAGQLTVCAGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALPTC 95          
BLAST of CB304928 vs. ExPASy Swiss-Prot
Match: NLTPX_ORYSJ (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. japonica GN=LTP-2 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.959e-14
Identity = 31/68 (45.59%), Postives = 44/68 (64.71%), Query Frame = -1
Query:  216 ATCNPTELSPCAPAITSSAPPSRACCNKMRQQRPCLCGFLRDPNLKQYVNSPNAKRVIATCGIPYPRC 419
            A CN  +L+ C  AI   A P+ ACC+ +R Q+ C C F +DP   +YVNSPNA++ +++CGI  P C
Sbjct:   28 AGCNAGQLTVCTGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALPTC 95          
BLAST of CB304928 vs. ExPASy Swiss-Prot
Match: NLTP2_HORVU (Probable non-specific lipid-transfer protein OS=Hordeum vulgare GN=LTP2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.959e-14
Identity = 31/68 (45.59%), Postives = 42/68 (61.76%), Query Frame = -1
Query:  216 ATCNPTELSPCAPAITSSAPPSRACCNKMRQQRPCLCGFLRDPNLKQYVNSPNAKRVIATCGIPYPRC 419
            A C P +L+ CA AI     PS  CC  +R Q+ CLC +++DPN   YV+SP+A+  +  CGIP P C
Sbjct:   35 AACEPAQLAVCASAILGGTKPSGECCGNLRAQQGCLCQYVKDPNYGHYVSSPHARDTLNLCGIPVPHC 102          
BLAST of CB304928 vs. ExPASy Swiss-Prot
Match: NLT2P_WHEAT (Non-specific lipid-transfer protein 2P OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.160e-13
Identity = 28/66 (42.42%), Postives = 41/66 (62.12%), Query Frame = -1
Query:  216 CNPTELSPCAPAITSSAPPSRACCNKMRQQRPCLCGFLRDPNLKQYVNSPNAKRVIATCGIPYPRC 413
            C  ++L+ CA AI S A PS  CC  +R Q+PC C + +DP   QY+ SP+A+  + +CG+  P C
Sbjct:    2 CQASQLAVCASAILSGAKPSGECCGNLRAQQPCFCQYAKDPTYGQYIRSPHARDTLQSCGLAVPHC 67          
BLAST of CB304928 vs. ExPASy Swiss-Prot
Match: NLT2G_WHEAT (Non-specific lipid-transfer protein 2G OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.062e-12
Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = -1
Query:  216 CNPTELSPCAPAITSSAPPSRACCNKMRQQRPCLCGFLRDPNLKQYVNSPNAKRVIATCGIPYPRC 413
            C  ++L+ CA AI S A PS  CC  +R Q+ C C + +DP   QY+ SP+A+  + +CG+  P C
Sbjct:    2 CQASQLAVCASAILSGAKPSGECCGNLRAQQGCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVPHC 67          
The following BLAST results are available for this feature:
BLAST of CB304928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
NLTP_VIGUN3.426e-2360.00Probable non-specific lipid-transfer protein AKCS9... [more]
NLTP2_PRUAR4.188e-2156.72Non-specific lipid-transfer protein 2 OS=Prunus ar... [more]
NLTP2_MAIZE4.485e-1551.43Probable non-specific lipid-transfer protein 2 OS=... [more]
NLTPX_ORYSI7.650e-1547.06Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLTPX_ORYSJ4.959e-1445.59Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLTP2_HORVU4.959e-1445.59Probable non-specific lipid-transfer protein OS=Ho... [more]
NLT2P_WHEAT7.160e-1342.42Non-specific lipid-transfer protein 2P OS=Triticum... [more]
NLT2G_WHEAT6.062e-1240.91Non-specific lipid-transfer protein 2G OS=Triticum... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_C05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_C05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304928 ID=CB304928; Name=CB304928; organism=Citrus sinensis; type=EST; length=548bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAACAACCACAACTTATT
ATTTTATTTTATTAATTAACCTCATATTCGCACATATTGCTATTCATATA
TTTTTTCATAGCTTCACTAGTAAACTAATGCCAACATAACCATGCACCTC
TCAAGATTTTATTTAGTAACACCCTCCTTTTAAGCACTAATAAACAAGGC
GTATTATTAACCCTAACACCGAGGATAGGGAATTCCGCAGGTAGCAATAA
CCCTTTTAGCATTGGGAGAGTTAACATATTGCTTCAGGTTAGGGTCCCTC
AGGAACCCACAAAGACATGGCCTCTGCTGCCTCATCTTGTTGCAGCATGC
TCTCGACGGCGGTGCCGACGATGTGATTGCTGGCGCACATGGGCTCAGCT
CCGTAGGGTTGCACGTCGCTGCCTCTGCCACATTAACTTGGCTTAGTGCT
GCCACAGCCACCAGCAGCGCCACGACAAAGCCCACAGCCGCAACAGAAGA
AACCTTCTTCATTATCAAAACTATTTGTCACAAAACAAAAATATACCC
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