CB304941

Overview
NameCB304941
Unique NameCB304941
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304941_ssr121 microsatellite CB304941_ssr121:121..132. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6967 contig Csv1_Contig6967:59..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKB12_ARATH (Peptidyl-prolyl isomerase FKBP12 OS=Arabidopsis thaliana GN=FKBP12 PE=1 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.087e-52
Identity = 91/112 (81.25%), Postives = 103/112 (91.96%), Query Frame = -1
Query:  203 MGIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 538
            MG+EKQ++ PGNGPKP  GQ VTVHCTG+GK+GDLSQKFWS KD GQ+PF+FQIGKG+VIKGWDEGV+GMQ+GEVARLRCS DYAYGAGGFP WGIQPNSVLDFEI+VL V+
Sbjct:    1 MGVEKQVIRPGNGPKPAPGQTVTVHCTGFGKDGDLSQKFWSTKDEGQKPFSFQIGKGAVIKGWDEGVIGMQIGEVARLRCSSDYAYGAGGFPAWGIQPNSVLDFEIEVLSVQ 112          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKB12_VICFA (Peptidyl-prolyl isomerase FKBP12 OS=Vicia faba GN=FKBP12 PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.162e-52
Identity = 91/112 (81.25%), Postives = 101/112 (90.18%), Query Frame = -1
Query:  203 MGIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 538
            MG+EKQI+  G GP P  GQ VTVHCTGYGKNGDLSQKFWS KDPGQ PFTF+IG+GSVIKGWDEGV+GMQ+GEVARLRCSPDYAYGAGGFP WGIQPNSVL+FEI+VL+ +
Sbjct:    1 MGVEKQIIRAGTGPNPSRGQNVTVHCTGYGKNGDLSQKFWSTKDPGQNPFTFKIGQGSVIKGWDEGVLGMQLGEVARLRCSPDYAYGAGGFPAWGIQPNSVLEFEIEVLRAQ 112          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKB12_DROME (12 kDa FK506-binding protein OS=Drosophila melanogaster GN=FK506-bp2 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 2.887e-21
Identity = 58/113 (51.33%), Postives = 75/113 (66.37%), Query Frame = -1
Query:  203 MGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 538
            MG++   + PG+G   P  GQKVTVH TG   +G    KF S +D  + PF F IGKG VI+GWDEGV  + VG+ A+L CSPDYAYG+ G P   I PNS L F++++L+VE
Sbjct:    1 MGVQVVPIAPGDGSTYPKNGQKVTVHYTGTLDDGT---KFDSSRDRNK-PFKFTIGKGEVIRGWDEGVAQLSVGQRAKLICSPDYAYGSRGHP-GVIPPNSTLTFDVELLKVE 108          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP_GIBZE (FK506-binding protein 1 OS=Gibberella zeae GN=FPR1 PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 4.924e-21
Identity = 52/111 (46.85%), Postives = 69/111 (62.16%), Query Frame = -1
Query:  206 MGIEKQILTPGNGPKPVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 538
            MG+EK I+T G+GP P  GQKVT+  TG+ +  D ++        G+  F   IG G VIKGWDEGV  M++GE A L  SPDY YG  GFP   I PNS L F++++ ++
Sbjct:    1 MGVEKTIITQGSGPSPQVGQKVTMEYTGWLQKEDGTKGDQFDTSVGRGDFVVNIGVGQVIKGWDEGVTQMKLGEKATLHISPDYGYGPRGFP-GAIPPNSTLIFDVELKKI 110          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP_ASPOR (FK506-binding protein 1 OS=Aspergillus oryzae GN=fpr1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.924e-21
Identity = 52/120 (43.33%), Postives = 74/120 (61.67%), Query Frame = -1
Query:  206 MGIEKQILTPGNGPKPVAGQKVTVHCTGY------GKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYG---AGGFPQWGIQPNSVLDFEIQVLQV 538
            MG+E++I+T G+GP P +G KV++H TG+         G   ++F S + PG+ P    IG+G VIKGWDEGVM M +GE + L  +PDY YG   AG  P      NS L FE+++L++
Sbjct:    1 MGVERKIITRGSGPSPASGDKVSIHYTGWIYDPKKANKGFQGKQFDSSRSPGRGPLVVNIGQGKVIKGWDEGVMQMSLGEKSTLTITPDYGYGDKAAGKIP-----ANSTLIFEVELLKI 115          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKB1A_EMENI (FK506-binding protein 1A OS=Emericella nidulans GN=fprA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.097e-20
Identity = 59/115 (51.30%), Postives = 77/115 (66.96%), Query Frame = -1
Query:  206 MGIEKQILTPGNG---PKPVAGQKVTVHCTGYGKNGDLSQKFWSPKD-PGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 538
            MG+E Q ++PG+G   PKP  G  V++H TG   +G    KF S +D PG   F  QIG G VIKGWDEGV+ + VGE A+L C+PDYAYGA GFP   I PN+ L FE+++L++
Sbjct:    1 MGVEVQRISPGDGKNFPKP--GDTVSIHYTGTLADGS---KFDSSRDRPGT--FVTQIGVGRVIKGWDEGVLQLSVGEKAKLICTPDYAYGARGFPP-VIPPNATLTFEVELLKI 107          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP_SCHPO (FK506-binding protein OS=Schizosaccharomyces pombe GN=SPBC839.17c PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.213e-19
Identity = 55/114 (48.25%), Postives = 73/114 (64.04%), Query Frame = -1
Query:  206 MGIEKQILTPGNG---PKPVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 538
            MG+EKQ+++ GNG   PKP  G ++T+H TG   NG   +KF S  D G  PF   IG G +I+GWDEGV  M +GE A+L  +PDY YG  GFP   I PNS L F++++L +
Sbjct:    1 MGVEKQVISSGNGQDFPKP--GDRITMHYTGTLTNG---KKFDSSVDRGS-PFVCTIGVGQLIRGWDEGVPKMSLGEKAKLTITPDYGYGPRGFPGL-IPPNSTLLFDVELLAI 107          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP1_RHIOR (FK506-binding protein 1 OS=Rhizopus oryzae GN=FKBP1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.019e-19
Identity = 49/112 (43.75%), Postives = 70/112 (62.50%), Query Frame = -1
Query:  206 MGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 538
            MG+  + + PG+G   P  G  VT+H TG  +NG +    +       +PF  QIG G VIKGWDEGV+ + +G+ A L C+PDYAYG  GFP   I PN+ L+FE+++L++
Sbjct:    1 MGVTVETIQPGDGKNFPKKGDTVTMHYTGTLQNGSV----FDSSVRRNEPFVTQIGVGRVIKGWDEGVLQLSLGQKANLICTPDYAYGPRGFPP-VIPPNATLNFEVELLKI 107          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKB1A_XENLA (Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Xenopus laevis GN=fkbp1a PE=3 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 7.861e-19
Identity = 53/113 (46.90%), Postives = 74/113 (65.49%), Query Frame = -1
Query:  203 MGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQVE 538
            MG++ + +T G+G   P  GQ V VH  G  +NG   +KF S +D  + PF F IG+  VI+GW+EGV  M VG+ ARL CSPD+AYGA G P   I PN+ L F++++L++E
Sbjct:    1 MGVQVETITEGDGRTFPKKGQTVVVHYVGSLENG---KKFDSSRDRNK-PFKFIIGRCEVIRGWEEGVAQMSVGQRARLTCSPDFAYGATGHPGI-IPPNATLTFDVELLRLE 108          
BLAST of CB304941 vs. ExPASy Swiss-Prot
Match: FKBP_CRYNV (FK506-binding protein 1 OS=Cryptococcus neoformans var. grubii GN=FRR1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.027e-18
Identity = 53/112 (47.32%), Postives = 71/112 (63.39%), Query Frame = -1
Query:  206 MGIEKQILTPGNGPK-PVAGQKVTVHCTGYGKNGDLSQKFWSPKDPGQQPFTFQIGKGSVIKGWDEGVMGMQVGEVARLRCSPDYAYGAGGFPQWGIQPNSVLDFEIQVLQV 538
            MG+  + ++ G+G   P  G  VT+H  G   +G    KF S +D G  PF  +IG+G VI+GWDEGV  + VG+ A L C+PDYAYGA GFP   I PNS L FE+++L+V
Sbjct:    1 MGVTVENISAGDGKTFPQPGDNVTIHYVGTLLDGS---KFDSSRDRGT-PFVCRIGQGQVIRGWDEGVPQLSVGQKANLICTPDYAYGARGFPP-VIPPNSTLKFEVELLKV 107          
The following BLAST results are available for this feature:
BLAST of CB304941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
FKB12_ARATH1.087e-5281.25Peptidyl-prolyl isomerase FKBP12 OS=Arabidopsis th... [more]
FKB12_VICFA3.162e-5281.25Peptidyl-prolyl isomerase FKBP12 OS=Vicia faba GN=... [more]
FKB12_DROME2.887e-2151.3312 kDa FK506-binding protein OS=Drosophila melanog... [more]
FKBP_GIBZE4.924e-2146.85FK506-binding protein 1 OS=Gibberella zeae GN=FPR1... [more]
FKBP_ASPOR4.924e-2143.33FK506-binding protein 1 OS=Aspergillus oryzae GN=f... [more]
FKB1A_EMENI1.097e-2051.30FK506-binding protein 1A OS=Emericella nidulans GN... [more]
FKBP_SCHPO1.213e-1948.25FK506-binding protein OS=Schizosaccharomyces pombe... [more]
FKBP1_RHIOR6.019e-1943.75FK506-binding protein 1 OS=Rhizopus oryzae GN=FKBP... [more]
FKB1A_XENLA7.861e-1946.90Peptidyl-prolyl cis-trans isomerase FKBP1A OS=Xeno... [more]
FKBP_CRYNV1.027e-1847.32FK506-binding protein 1 OS=Cryptococcus neoformans... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_E03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_E03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304941 ID=CB304941; Name=CB304941; organism=Citrus sinensis; type=EST; length=589bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAAAAAGTTGCACATGTA
GTGTTATTAAAACGTCGAAAAAAAAATCGTTCCAACATATCCATCTGATA
TTTATCAGGAGTTCAGGATAACATACATACATGTCCATGGTAAGACAATT
TATTTAAAACCATAAAATTTCTAGATGGTTTTCTGCCTTTATGAGGTGCT
TATTCTACCTGCAGGACTTGTATCTCGAAATCCAGGACTGAGTTAGGTTG
AATCCCCCATTGTGGAAATCCACCAGCACCATAGGCGTAATCTGGGGAGC
ACCGCAGACGAGCAACTTCTCCCACCTGCATTCCCATCACGCCTTCATCC
CATCCTTTTATAACAGAGCCTTTGCCAATCTGGAATGTAAAAGGCTGCTG
CCCAGGGTCCTTTGGGCTCCAGAACTTCTGAGACAGATCGCCATTTTTCC
CGTAGCCAGTGCAGTGGACGGTAACCTTCTGACCAGCAACCGGCTTAGGA
CCGTTTCCTGGGGTCAAAATTTGCTTCTCTATTCCCATCTCCTTCTCTGT
CTTAGGGTTTTTGACTTTCTGGTAACTCTTTTTAATCCC
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