CB304947

Overview
NameCB304947
Unique NameCB304947
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig360 contig Csv1_Contig360:1..562. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304947 vs. ExPASy Swiss-Prot
Match: APR1_ARATH (5'-adenylylsulfate reductase 1, chloroplastic OS=Arabidopsis thaliana GN=APR1 PE=1 SV=2)

HSP 1 Score: 347.821 bits (891), Expect = 2.104e-95
Identity = 162/177 (91.53%), Postives = 171/177 (96.61%), Query Frame = -2
Query:   32 DVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQEDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHTQGYISIGCEPCTRPVLPGQ 562
            DVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFD VEKH+GIRIEYMFPD+VEVQ LVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGL+AWITGQRKDQSPGTRSEIPVVQ DPVFEGL+GGVGSLVKWNPVANV+GND+WNFLRTMDVP+N+LH  GYISIGCEPCT+ VLPGQ
Sbjct:  129 DVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDAVEKHYGIRIEYMFPDSVEVQGLVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLKAWITGQRKDQSPGTRSEIPVVQVDPVFEGLDGGVGSLVKWNPVANVEGNDVWNFLRTMDVPVNTLHAAGYISIGCEPCTKAVLPGQ 305          
BLAST of CB304947 vs. ExPASy Swiss-Prot
Match: APR3_ARATH (5'-adenylylsulfate reductase 3, chloroplastic OS=Arabidopsis thaliana GN=APR3 PE=2 SV=2)

HSP 1 Score: 347.436 bits (890), Expect = 2.747e-95
Identity = 161/177 (90.96%), Postives = 171/177 (96.61%), Query Frame = -2
Query:   32 DVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQEDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHTQGYISIGCEPCTRPVLPGQ 562
            DVALIEYAHLTGRP+RVFSLDTGRLNPETYR FD VEKH+GIRIEYMFPDAVEVQALVR+KGLFSFYEDGHQECCR+RKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQ DPVFEGL+GGVGSLVKWNPVANV+GND+WNFLRTMDVP+N+LH  GY+SIGCEPCTR VLPGQ
Sbjct:  121 DVALIEYAHLTGRPYRVFSLDTGRLNPETYRLFDTVEKHYGIRIEYMFPDAVEVQALVRNKGLFSFYEDGHQECCRIRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQVDPVFEGLDGGVGSLVKWNPVANVEGNDVWNFLRTMDVPVNTLHAAGYVSIGCEPCTRAVLPGQ 297          
BLAST of CB304947 vs. ExPASy Swiss-Prot
Match: APR2_ARATH (5'-adenylylsulfate reductase 2, chloroplastic OS=Arabidopsis thaliana GN=APR2 PE=2 SV=2)

HSP 1 Score: 341.273 bits (874), Expect = 1.969e-93
Identity = 158/177 (89.27%), Postives = 170/177 (96.05%), Query Frame = -2
Query:   32 DVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQEDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHTQGYISIGCEPCTRPVLPGQ 562
            DVALIEYA LTG+PFRVFSLDTGRLNPETYR FD VEK +GIRIEYMFPDAVEVQALVR+KGLFSFYEDGHQECCRVRKVRPLRRALKGL+AWITGQRKDQSPGTRSEIP+VQ DPVFEGL+GGVGSLVKWNP+ANV+G D+WNFLRTMDVP+N+LH QGY+SIGCEPCTRPVLPGQ
Sbjct:  121 DVALIEYARLTGKPFRVFSLDTGRLNPETYRLFDAVEKQYGIRIEYMFPDAVEVQALVRNKGLFSFYEDGHQECCRVRKVRPLRRALKGLKAWITGQRKDQSPGTRSEIPIVQVDPVFEGLDGGVGSLVKWNPLANVEGADVWNFLRTMDVPVNALHAQGYVSIGCEPCTRPVLPGQ 297          
BLAST of CB304947 vs. ExPASy Swiss-Prot
Match: CYSH_PSEAE (Phosphoadenosine phosphosulfate reductase OS=Pseudomonas aeruginosa GN=cysH PE=1 SV=2)

HSP 1 Score: 213.772 bits (543), Expect = 4.741e-55
Identity = 97/177 (54.80%), Postives = 131/177 (74.01%), Query Frame = -2
Query:   32 DVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQEDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHTQGYISIGCEPCTRPVLPGQ 562
            DV L++ A    R  +VFSLDTGRL+PETYRF D+V +H+GI I+ + PD   ++ LV+ KGLFSFY DGH ECC +RK+ PL+R L G+RAW TGQR+DQSPGTRS++ V++ D  F   E     L K+NP++++   ++W ++R +++P NSLH +GYISIGCEPCTRPVLP Q
Sbjct:   66 DVVLVDMAWKLNRNVKVFSLDTGRLHPETYRFIDQVREHYGIAIDVLSPDPRLLEPLVKEKGLFSFYRDGHGECCGIRKIEPLKRKLAGVRAWATGQRRDQSPGTRSQVAVLEIDGAFSTPE---KPLYKFNPLSSMTSEEVWGYIRMLELPYNSLHERGYISIGCEPCTRPVLPNQ 239          
BLAST of CB304947 vs. ExPASy Swiss-Prot
Match: CYSH_PSEAB (Phosphoadenosine phosphosulfate reductase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=cysH PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 4.741e-55
Identity = 97/177 (54.80%), Postives = 131/177 (74.01%), Query Frame = -2
Query:   32 DVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQEDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHTQGYISIGCEPCTRPVLPGQ 562
            DV L++ A    R  +VFSLDTGRL+PETYRF D+V +H+GI I+ + PD   ++ LV+ KGLFSFY DGH ECC +RK+ PL+R L G+RAW TGQR+DQSPGTRS++ V++ D  F   E     L K+NP++++   ++W ++R +++P NSLH +GYISIGCEPCTRPVLP Q
Sbjct:   66 DVVLVDMAWKLNRNVKVFSLDTGRLHPETYRFIDQVREHYGIAIDVLSPDPRLLEPLVKEKGLFSFYRDGHGECCGIRKIEPLKRKLAGVRAWATGQRRDQSPGTRSQVAVLEIDGAFSTPE---KPLYKFNPLSSMTSEEVWGYIRMLELPYNSLHERGYISIGCEPCTRPVLPNQ 239          
BLAST of CB304947 vs. ExPASy Swiss-Prot
Match: CYSH_PSEA8 (Phosphoadenosine phosphosulfate reductase OS=Pseudomonas aeruginosa (strain LESB58) GN=cysH PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 4.741e-55
Identity = 97/177 (54.80%), Postives = 131/177 (74.01%), Query Frame = -2
Query:   32 DVALIEYAHLTGRPFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYEDGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQEDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHTQGYISIGCEPCTRPVLPGQ 562
            DV L++ A    R  +VFSLDTGRL+PETYRF D+V +H+GI I+ + PD   ++ LV+ KGLFSFY DGH ECC +RK+ PL+R L G+RAW TGQR+DQSPGTRS++ V++ D  F   E     L K+NP++++   ++W ++R +++P NSLH +GYISIGCEPCTRPVLP Q
Sbjct:   66 DVVLVDMAWKLNRNVKVFSLDTGRLHPETYRFIDQVREHYGIAIDVLSPDPRLLEPLVKEKGLFSFYRDGHGECCGIRKIEPLKRKLAGVRAWATGQRRDQSPGTRSQVAVLEIDGAFSTPE---KPLYKFNPLSSMTSEEVWGYIRMLELPYNSLHERGYISIGCEPCTRPVLPNQ 239          
BLAST of CB304947 vs. ExPASy Swiss-Prot
Match: CYSH_NEIMB (Phosphoadenosine phosphosulfate reductase OS=Neisseria meningitidis serogroup B GN=cysH1 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.176e-29
Identity = 67/164 (40.85%), Postives = 101/164 (61.59%), Query Frame = -2
Query:   32 VFSLDTGRLNPETYRFFDEVEKHFG-IRIEYMFPDAVEVQALVRSKGLFSFYE--DGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQEDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHTQGYISIGCEPCTRPVLPGQ 514
            +F+LDTG L+ ET    D + + +  +RI+   P   +    V SKG F+FY+  +  +ECCR+RK  PL RA+ G  AW+TGQR++QS  TR+E+P  + D        G+G   K+NP+ +   +D+W ++   +VP N L+ QG+ SIGC+PCTRPV  G+
Sbjct:   71 IFTLDTGLLHTETLNLLDRLGRAYPHLRIKRFRPVREDADRYVESKGRFAFYDSVEARRECCRIRKTEPLNRAIAGADAWLTGQRREQS-ATRTELPFAEYDA-----GRGIG---KYNPIFDWSEHDVWAYILANNVPYNDLYRQGFPSIGCDPCTRPVKAGE 225          
BLAST of CB304947 vs. ExPASy Swiss-Prot
Match: CYSH_NEIMA (Phosphoadenosine phosphosulfate reductase OS=Neisseria meningitidis serogroup A GN=cysH PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.421e-29
Identity = 67/164 (40.85%), Postives = 102/164 (62.20%), Query Frame = -2
Query:   32 VFSLDTGRLNPETYRFFDEVEKHFG-IRIEYMFPDAVEVQALVRSKGLFSFYE--DGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQEDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHTQGYISIGCEPCTRPVLPGQ 514
            +F+LDTG L+ ET    D +E+ +  ++I+   P   +    V SKG F+FY+  +  +ECCR+RK  PL RA+ G  AW+TGQR++QS  TR+E+P  + D        G G + K+NP+ +   +D+W ++   +VP N L+ QG+ SIGC+PCTRPV  G+
Sbjct:   69 IFTLDTGLLHAETLNLLDRIERVYPHMQIKRFQPIREDALHYVESKGRFAFYDSVEARRECCRIRKTEPLDRAIAGADAWLTGQRREQS-ATRTELPFAEYD-------AGRG-IDKYNPIFDWSEHDVWAYILANNVPYNDLYRQGFPSIGCDPCTRPVKAGE 223          
BLAST of CB304947 vs. ExPASy Swiss-Prot
Match: CYSH_RHITR (Phosphoadenosine phosphosulfate reductase (Fragment) OS=Rhizobium tropici GN=cysH PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.437e-27
Identity = 66/160 (41.25%), Postives = 90/160 (56.25%), Query Frame = -2
Query:   32 LDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYE--DGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQEDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHTQGYISIGCEPCTRPVLPGQ 505
            L TGRL PET +  DE E  + IRI    P+  ++ A     GL  FYE  +    CC VRK++PL RAL G   W+TG R+ QS   R++ P  + DP          +L+K NP+A+   + I  ++    VP+N LH +GY SIGCEPCTR + PG+
Sbjct:    1 LQTGRLFPETLKLIDETENQYDIRISRYEPEQADIDAYAEKYGLNGFYESVEARHACCGVRKLKPLARALSGATIWVTGLRRGQS-ANRADTPFAEYDPE--------RNLIKVNPLADWDIDVIRAYVADNGVPVNPLHQRGYPSIGCEPCTRAIKPGE 151          
BLAST of CB304947 vs. ExPASy Swiss-Prot
Match: CYSH_AGRT5 (Phosphoadenosine phosphosulfate reductase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=cysH PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.039e-26
Identity = 66/166 (39.76%), Postives = 91/166 (54.82%), Query Frame = -2
Query:   32 PFRVFSLDTGRLNPETYRFFDEVEKHFGIRIEYMFPDAVEVQALVRSKGLFSFYE--DGHQECCRVRKVRPLRRALKGLRAWITGQRKDQSPGTRSEIPVVQEDPVFEGLEGGVGSLVKWNPVANVKGNDIWNFLRTMDVPINSLHTQGYISIGCEPCTRPVLPGQ 523
            P  V +L+TGRL  ET    DE E+ FGI I    P+  ++ A     GL  FYE  +    CC VRK+ PL +AL+G   WITG R+ QS G R+  P  + D           +L+K N +A+     I  ++   ++P+N LH +GY SIGCEPCTR + PG+
Sbjct:   68 PIDVVTLETGRLFKETVDLIDETEERFGIEIRRFRPEQDDIDAYAAKYGLNGFYESVEARHACCHVRKLIPLGKALEGAAFWITGLRRGQS-GNRAATPFAEFD--------AERNLIKINALADWDIEQIRAYVAEENIPVNPLHQRGYPSIGCEPCTRAIKPGE 224          
The following BLAST results are available for this feature:
BLAST of CB304947 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
APR1_ARATH2.104e-9591.535'-adenylylsulfate reductase 1, chloroplastic OS=A... [more]
APR3_ARATH2.747e-9590.965'-adenylylsulfate reductase 3, chloroplastic OS=A... [more]
APR2_ARATH1.969e-9389.275'-adenylylsulfate reductase 2, chloroplastic OS=A... [more]
CYSH_PSEAE4.741e-5554.80Phosphoadenosine phosphosulfate reductase OS=Pseud... [more]
CYSH_PSEAB4.741e-5554.80Phosphoadenosine phosphosulfate reductase OS=Pseud... [more]
CYSH_PSEA84.741e-5554.80Phosphoadenosine phosphosulfate reductase OS=Pseud... [more]
CYSH_NEIMB1.176e-2940.85Phosphoadenosine phosphosulfate reductase OS=Neiss... [more]
CYSH_NEIMA3.421e-2940.85Phosphoadenosine phosphosulfate reductase OS=Neiss... [more]
CYSH_RHITR1.437e-2741.25Phosphoadenosine phosphosulfate reductase (Fragmen... [more]
CYSH_AGRT56.039e-2639.76Phosphoadenosine phosphosulfate reductase OS=Agrob... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_E09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_E09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304947 ID=CB304947; Name=CB304947; organism=Citrus sinensis; type=EST; length=563bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTGTCCTGGAAGGACAGGC
CTTGTGCATGGCTCACACCCAATTGAGATGTACCCTTGTGTGTGCAAGGA
ATTGATGGGCACATCCATAGTACGAAGGAAGTTCCAAATGTCATTCCCCT
TCACATTAGCCACTGGATTCCACTTCACCAGGCTGCCAACCCCACCTTCC
AGCCCCTCAAAAACTGGATCCTCCTGGACTACAGGGATTTCAGACCTAGT
ACCTGGAGACTGATCTTTCCTTTGGCCAGTGATCCAGGCACGCAATCCCT
TGAGGGCCCTCCGAAGGGGCCTCACTTTCCTCACACGGCAGCACTCCTGG
TGCCCATCCTCATAGAAAGAGAAGAGCCCCTTGCTCCTCACTAATGCCTG
AACTTCAACAGCATCGGGAAACATGTATTCAATACGTATGCCAAAATGTT
TCTCAACTTCGTCAAAGAATCTATATGTTTCTGGGTTTAGCCTTCCAGTA
TCCAGGCTAAACACCCTAAATGGTCTACCAGTTAAATGGGCATACTCGAT
CAAAGCAACATCT
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