CB304948

Overview
NameCB304948
Unique NameCB304948
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length517
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1847 contig Csv1_Contig1847:4..520. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB304948 vs. ExPASy Swiss-Prot
Match: CX5C3_ARATH (Probable cytochrome c oxidase subunit 5C-3 OS=Arabidopsis thaliana GN=At5g61310 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.940e-12
Identity = 35/55 (63.64%), Postives = 39/55 (70.91%), Query Frame = -3 
Query:  273 MAGHKIAHAPLKGPSVVKEISXXXXXXXXXXXLRKMNQWNNQRKSRVFYDLLEKG 437
            MAGHKIAHA LKGPSVVKE+            L KM+ WN QRK+RVFYDLLE+G
Sbjct:    1 MAGHKIAHATLKGPSVVKELVIGLTLGLAAGGLWKMHHWNEQRKTRVFYDLLERG 55
[Close]
BLAST of CB304948 vs. ExPASy Swiss-Prot
Match: CX5C2_ARATH (Cytochrome c oxidase subunit 5C-2 OS=Arabidopsis thaliana GN=At3g62400 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.397e-11
Identity = 33/55 (60.00%), Postives = 38/55 (69.09%), Query Frame = -3 
Query:  273 MAGHKIAHAPLKGPSVVKEISXXXXXXXXXXXLRKMNQWNNQRKSRVFYDLLEKG 437
            MAGHK+AHA LKGPSVVKE+            L KM+ WN QRK+R FYDLLE+G
Sbjct:    1 MAGHKVAHATLKGPSVVKELIIGLTLGLAAGGLWKMHHWNEQRKTRTFYDLLERG 55
[Close]
BLAST of CB304948 vs. ExPASy Swiss-Prot
Match: CX5C1_ARATH (Probable cytochrome c oxidase subunit 5C-1 OS=Arabidopsis thaliana GN=At2g47380 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.397e-11
Identity = 33/55 (60.00%), Postives = 38/55 (69.09%), Query Frame = -3 
Query:  273 MAGHKIAHAPLKGPSVVKEISXXXXXXXXXXXLRKMNQWNNQRKSRVFYDLLEKG 437
            MAGHK+AHA LKGPSVVKE+            L KM+ WN QRK+R FYDLLE+G
Sbjct:    1 MAGHKVAHATLKGPSVVKELFIGLALGLAAGGLWKMHHWNEQRKTRTFYDLLERG 55
The following BLAST results are available for this feature:
BLAST of CB304948 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CX5C3_ARATH8.940e-1263.64Probable cytochrome c oxidase subunit 5C-3 OS=Arab... [more]
CX5C2_ARATH3.397e-1160.00Cytochrome c oxidase subunit 5C-2 OS=Arabidopsis t... [more]
CX5C1_ARATH3.397e-1160.00Probable cytochrome c oxidase subunit 5C-1 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_E10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_E10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304948 ID=CB304948; Name=CB304948; organism=Citrus sinensis; type=EST; length=517bp
TTTTTTTTTTTTTTTTTNNNTTTTTTTTTTCAAAGTAAACAAGACAGATA
ATGCTTGATGAAGAGAACCAAGAATCTTTACAATTTCATAACCAACAATC
AGTCAAGTCTCAGAAAAGAAAATTTATTTGTTGAAAACCCAAACTATGGA
AGATCATGTGAGATCTAGGCGCCAAATAAGGAGAATCCAAATTATCAGAG
TACCATTGAAGCCATCCACATCATCACCGTGATAACGTAAACACTTTATT
CCTCTACAACAACGCTAACTTCACCTTTCTCTAGCAAGTCATAAAATACC
CTTGACTTTCTTTGATTATTCCACTGATTCATCTTCCGAAGACCACCAGC
AGCCAGCCCCAGGGTAATTCCTAAACTTATCTCCTTGACAACGCTTGGAC
CTTTCAAGGGGGCATGAGCAATCTTGTGGCCAGCCATTTCACTTCTAGTT
AAATGCTATAAACCCGGGCGGAGACGAGACCGATTAAGCGAATAGCACGA
GTCAGATTGAGCACCCC
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