CB304954

Overview
NameCB304954
Unique NameCB304954
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length640
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB304954_ssr173 microsatellite CB304954_ssr173:173..184. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13714 contig Csv1_Contig13714:607..1246. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304954 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.803e-38
Identity = 79/119 (66.39%), Postives = 95/119 (79.83%), Query Frame = -1
Query:  272 SSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 628
            +S R+T+ FANAR+DWKETP++HVFKADLPG++         EG +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+NAKV+QVKASMENGVLTVT           KAIEISG
Sbjct:   31 TSDRDTAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTVPKAEVKKPEVKAIEISG 149          
BLAST of CB304954 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.355e-38
Identity = 80/118 (67.80%), Postives = 92/118 (77.97%), Query Frame = -1
Query:  272 SARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 625
            ++ ET+ FA ARIDWKETP+AHVFKAD+PGL+         +G ILQISGER+KEQEEK D+WHRVERSSGKFLRRFRLPDNAK EQ+KASMENGVLTVT           K+I+ISG
Sbjct:   44 ASSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPKEEAKKPDVKSIQISG 161          
BLAST of CB304954 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.016e-38
Identity = 79/123 (64.23%), Postives = 94/123 (76.42%), Query Frame = -1
Query:  272 TNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 640
            ++A    +ET+ F N  IDWKETPQAHVFKADLPGL+         EG++LQISGER+KE+EEKNDKWHRVERSSGKFLRRFRLP+NAKV++VKA+M NGV+TVT           KAI+ISG
Sbjct:   35 SSASEFGKETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPKVEIKKPEVKAIDISG 157          
BLAST of CB304954 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.851e-38
Identity = 80/119 (67.23%), Postives = 93/119 (78.15%), Query Frame = -1
Query:  272 SSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 628
            S++ ETS FAN RIDWKETP+AHVFKADLPGL+         E R+LQISGER+ E+E+KND WHRVERSSGKF+RRFRLP+NAK++QVKASMENGVLTVT           K+IEISG
Sbjct:   36 SNSGETSAFANTRIDWKETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVNNPDVKSIEISG 154          
BLAST of CB304954 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.169e-37
Identity = 77/118 (65.25%), Postives = 91/118 (77.12%), Query Frame = -1
Query:  272 SARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 625
            ++ ET+ FA ARIDWKETP+AHVFKAD+PGL+         +G +LQISGERSKEQEEK DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT           K+I+++G
Sbjct:   44 TSSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQVTG 161          
BLAST of CB304954 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.526e-37
Identity = 78/119 (65.55%), Postives = 93/119 (78.15%), Query Frame = -1
Query:  272 SSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 628
            +S  +T+ FANARIDWKETP++HVFKADLPG++         EG +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+NAKV+QVKA MENGVLTVT           KAIEISG
Sbjct:   32 TSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of CB304954 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.993e-37
Identity = 77/120 (64.17%), Postives = 91/120 (75.83%), Query Frame = -1
Query:  272 PSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 631
            P  +RE S F + R+DWKETP+AHVFKAD+PGL+         + ++LQISGER+ E+E+KND WHRVERSSGKF+RRFRLP+NAKVEQVKASMENGVLTVT           KAIEISG
Sbjct:   42 PEFSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 161          
BLAST of CB304954 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.993e-37
Identity = 79/119 (66.39%), Postives = 93/119 (78.15%), Query Frame = -1
Query:  272 SSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 628
            +++ ETS FAN RIDWKETP+AHVFKADLPGL+         E R+LQISGER+ E+E+KNDKW RVERSSGKF+RRFRLP+NAK++QVKASMENGVLTVT           K+IEISG
Sbjct:   36 TNSGETSAFANTRIDWKETPEAHVFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEMKKPDVKSIEISG 154          
BLAST of CB304954 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.993e-37
Identity = 76/119 (63.87%), Postives = 92/119 (77.31%), Query Frame = -1
Query:  272 SSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 628
            S+AR+ + F NAR+DWKETP+AHVFKADLPGL+         +  +LQISGERSKE EEKNDKWHRVER+SGKF+RRFRLP+NAK+E+VKA+MENGVLTV            K+I+ISG
Sbjct:   41 STARDVAAFTNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVVPKAPEKKPQVKSIDISG 159          
BLAST of CB304954 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.400e-37
Identity = 77/119 (64.71%), Postives = 93/119 (78.15%), Query Frame = -1
Query:  272 SSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXEGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXKAIEISG 628
            +S  +T+ FANARIDWKETP++HVFKADLPG++         EG +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+NAKV+QVKA +ENGVLTVT           KAIEISG
Sbjct:   32 TSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 150          
The following BLAST results are available for this feature:
BLAST of CB304954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HS16C_ORYSJ1.803e-3866.3916.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HS17A_ORYSJ2.355e-3867.8017.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_DAUCA4.016e-3864.2317.8 kDa class I heat shock protein OS=Daucus caro... [more]
HSP12_SOLPE6.851e-3867.2317.6 kDa class I heat shock protein OS=Solanum per... [more]
HS181_ORYSJ1.169e-3765.2518.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16B_ORYSJ1.526e-3765.5516.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HSP16_SOYBN1.993e-3764.1718.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_SOLPE1.993e-3766.3917.7 kDa class I heat shock protein OS=Solanum per... [more]
HS181_ARATH1.993e-3763.8718.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HS16A_ORYSJ3.400e-3764.7116.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_F09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_F09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304954 ID=CB304954; Name=CB304954; organism=Citrus sinensis; type=EST; length=640bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACATTACAAAATATATTTTA
TTGCATCACACTTTTTTATCATTTAAAAAACTAGTTACAACGCTTGAGAC
TGGCTCCTGAAGCTCTTGCAAACACACAAACATAATCACATCAAATTAAA
CAGGGGGAAGGGAAGAAAACAAACACACACACACATACAAACACACAAGG
GCTTTGCTTTCGTACCAAATTTATTAGCAAACCAAAGACACTATCTTGAA
AACATTTACAGTTATCACTTAGCCAGAGATCTCAATAGCCTTAACTTCAG
GTTTCTTCTCCTCCTGTTTAGGAACGGTGACTGTGAGCACACCATTCTCC
ATGCTGGCCTTAACCTGTTCCACCTTAGCATTGTCGGGCAACCTGAACCT
CCTCAGGAACTTGCCACTGCTCCTCTCGACGCGATGCCACTTGTCATTCT
TCTCTTCCTGCTCCTTGCTCCTCTCTCCGCTTATCTGCAGAATCCTGCCC
TCTTCAACCACAACTTTTACTTCTTCTTTCCTCAGCCCTGGAAGATCAGC
TTTGAATACGTGAGCCTGAGGAGTCTCTTTCCAGTCAATTCTTGCATTGG
CGAATTGGGATGTTTCCCTAGCCGAAGACGGCGCGTTGGT
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