CB304960

Overview
NameCB304960
Unique NameCB304960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig297 contig Csv1_Contig297:34..573. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_ARATH (Protein CutA, chloroplastic OS=Arabidopsis thaliana GN=CUTA PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.257e-46
Identity = 91/107 (85.05%), Postives = 100/107 (93.46%), Query Frame = -1
Query:  220 KTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTRD 540
            KTVPSIVVYVTVPN+EAGKKLA SIV+ KLAACVN VPGIESVYEW+G++Q+D+EELLIIKTRQSLLE LTEHV ANHEYDVPEVIALPITGGS  YLEWLK+STR+
Sbjct:   76 KTVPSIVVYVTVPNREAGKKLANSIVQEKLAACVNIVPGIESVYEWEGKVQSDSEELLIIKTRQSLLEPLTEHVNANHEYDVPEVIALPITGGSDKYLEWLKNSTRN 182          
BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA1_ORYSJ (Protein CutA 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CUTA1 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 2.621e-44
Identity = 87/106 (82.08%), Postives = 97/106 (91.51%), Query Frame = -1
Query:  220 TVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTRD 537
            TVPSIVVYVTVPNKEAGK+LA SI+  KLAACVN VPGIESVY W+G++QTDAEELLIIKTR+SLL+ LTEHVKANHEYDVPEVIALPI GG+  YLEWLK+STR+
Sbjct:   71 TVPSIVVYVTVPNKEAGKRLAGSIISEKLAACVNIVPGIESVYWWEGKVQTDAEELLIIKTRESLLDALTEHVKANHEYDVPEVIALPIKGGNLKYLEWLKNSTRE 176          
BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_RAT (Protein CutA OS=Rattus norvegicus GN=Cuta PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 3.013e-24
Identity = 49/97 (50.52%), Postives = 73/97 (75.26%), Query Frame = -1
Query:  226 YVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSST 516
            +VT PN++  K++A ++V+ +LAACVN +P I S+YEWKG+I+ D+E L++IKT+ SL+  LTE V++ H Y+V EVIALP+  G+ PYL W+   T
Sbjct:   70 FVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTEFVRSVHPYEVAEVIALPVEQGNPPYLHWVHQVT 166          
BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_MOUSE (Protein CutA OS=Mus musculus GN=Cuta PE=2 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 3.013e-24
Identity = 49/97 (50.52%), Postives = 73/97 (75.26%), Query Frame = -1
Query:  226 YVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSST 516
            +VT PN++  K++A ++V+ +LAACVN +P I S+YEWKG+I+ D+E L++IKT+ SL+  LTE V++ H Y+V EVIALP+  G+ PYL W+   T
Sbjct:   70 FVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTEFVRSVHPYEVAEVIALPVEQGNPPYLHWVHQVT 166          
BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_HUMAN (Protein CutA OS=Homo sapiens GN=CUTA PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 3.013e-24
Identity = 48/97 (49.48%), Postives = 75/97 (77.32%), Query Frame = -1
Query:  226 YVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSST 516
            +VT PN++  K++A ++V+ +LAACVN +P I S+YEWKG+I+ D+E L++IKT+ SL+  LT+ V++ H Y+V EVIALP+  G+ PYL+W++  T
Sbjct:   72 FVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVT 168          
BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_XENLA (Protein CutA homolog OS=Xenopus laevis GN=cuta PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 1.495e-23
Identity = 50/93 (53.76%), Postives = 68/93 (73.12%), Query Frame = -1
Query:  238 YVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWL 516
            YVT PN    K +A  +V+ KLAACVN +P I S+YEWKG+++ D E LL+IKTR S +  LTE+V++ H Y+V EVI+LPI  G+ PYL+W+
Sbjct:   53 YVTCPNDTVAKDIARGLVERKLAACVNVIPQITSIYEWKGKLEEDTEVLLMIKTRSSKVSALTEYVRSVHPYEVCEVISLPIEQGNPPYLKWV 145          
BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_THET8 (Divalent-cation tolerance protein cutA OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=cutA PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.953e-23
Identity = 48/99 (48.48%), Postives = 71/99 (71.72%), Query Frame = -1
Query:  226 VVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSST 522
            VV +TVP++E  + +A+++V+ +LAACVN VPG+ S+Y W+GE+  D E LL++KT       L E VKA H Y VPE++ALPI  G++ YL+WL+ +T
Sbjct:    4 VVLITVPSEEVARTIAKALVEERLAACVNIVPGLTSIYRWQGEVVEDQELLLLVKTTTHAFPKLKERVKALHPYTVPEIVALPIAEGNREYLDWLRENT 102          
BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_BOVIN (Protein CutA OS=Bos taurus GN=CUTA PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.420e-23
Identity = 48/97 (49.48%), Postives = 74/97 (76.29%), Query Frame = -1
Query:  226 YVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSST 516
            +VT PN++  K++A ++V+ +LA CVN VP I S+YEWKG+I+ D+E L++IKT+ SL+  LT+ V++ H Y+V EVIALP+  G+ PYL+W++  T
Sbjct:   70 FVTCPNEKVAKEIARAVVEKRLA-CVNLVPQITSIYEWKGKIEEDSEVLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNSPYLQWVRQVT 165          
BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_ERWCT (Divalent-cation tolerance protein cutA OS=Erwinia carotovora subsp. atroseptica GN=cutA PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 3.811e-19
Identity = 39/102 (38.24%), Postives = 66/102 (64.71%), Query Frame = -1
Query:  223 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 528
            ++V+  T P+    ++LA S+++ +LAACV  +PG  S+Y W+G+++  +E  ++IK+  S  + L  H+K  H YD PE++ LP++GG   YL WL +S R
Sbjct:    9 AVVILCTAPDDACAQRLANSLLETRLAACVTLLPGARSLYYWEGKLEQQSEVQMLIKSDTSHQQALLTHLKQQHPYDTPELLVLPVSGGDSDYLTWLNASLR 110          
BLAST of CB304960 vs. ExPASy Swiss-Prot
Match: CUTA_DANRE (Protein CutA homolog OS=Danio rerio GN=cuta PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.503e-18
Identity = 39/101 (38.61%), Postives = 64/101 (63.37%), Query Frame = -1
Query:  220 VVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTRD 522
            ++ V  P ++  + +   I++ +LAACVN  P   ++Y WKGEI+   E LL+++T+ SL++ L  ++ A H YD+PE+I  PI  GSQ YL+W+  +  D
Sbjct:   49 LLLVNCPTEQTARDIGRIIMEKRLAACVNIFPRTATMYYWKGEIRDATEILLLVRTKTSLVQRLMTYITAIHPYDIPEIITFPINDGSQHYLKWIAEAVTD 149          
The following BLAST results are available for this feature:
BLAST of CB304960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CUTA_ARATH1.257e-4685.05Protein CutA, chloroplastic OS=Arabidopsis thalian... [more]
CUTA1_ORYSJ2.621e-4482.08Protein CutA 1, chloroplastic OS=Oryza sativa subs... [more]
CUTA_RAT3.013e-2450.52Protein CutA OS=Rattus norvegicus GN=Cuta PE=1 SV=... [more]
CUTA_MOUSE3.013e-2450.52Protein CutA OS=Mus musculus GN=Cuta PE=2 SV=3[more]
CUTA_HUMAN3.013e-2449.48Protein CutA OS=Homo sapiens GN=CUTA PE=1 SV=2[more]
CUTA_XENLA1.495e-2353.76Protein CutA homolog OS=Xenopus laevis GN=cuta PE=... [more]
CUTA_THET81.953e-2348.48Divalent-cation tolerance protein cutA OS=Thermus ... [more]
CUTA_BOVIN7.420e-2349.48Protein CutA OS=Bos taurus GN=CUTA PE=1 SV=1[more]
CUTA_ERWCT3.811e-1938.24Divalent-cation tolerance protein cutA OS=Erwinia ... [more]
CUTA_DANRE5.503e-1838.61Protein CutA homolog OS=Danio rerio GN=cuta PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_G03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_G03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304960 ID=CB304960; Name=CB304960; organism=Citrus sinensis; type=EST; length=540bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAAACTAAGGGCATACAT
CATCTCACAAGTTTTGCCAACATAGAATTCATCACGATATGTTCCAGTTC
GATTATAAAATATACAAACTTTATTCTAGTAGTACCATCTGCACACTCAA
CCCAACAACAAAAGGAGCTTATCAGTTACAGCGTCCACACACTACATCAC
ACTACATCCGCGGGAGTCAGTCCCTTGTACTGCTTTTTAGCCACTCTAGG
TATGGCTGGCTGCCACCAGTGATGGGCAAGGCAATTACTTCTGGCACATC
ATATTCATGATTTGCCTTGACATGCTCTGTCAGAGTTTCCAAAAGGGATT
GCCTAGTCTTTATAATAAGAAGTTCTTCAGCATCTGTCTGGATCTCTCCC
TTCCACTCGTAAACAGATTCAATACCTGGCACTCGATTCACACATGCTGC
AAGTTTTGCTTTCACTATGCTTTCAGCCAGTTTCTTTCCTGCTTCTTTGT
TAGGAACGGTGACATAAACTACAATACTTGGTACAGTTTT
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