CB304965

Overview
NameCB304965
Unique NameCB304965
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5402 contig Csv1_Contig5402:458..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304965 vs. ExPASy Swiss-Prot
Match: GSTF_HYOMU (Glutathione S-transferase OS=Hyoscyamus muticus PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.478e-26
Identity = 54/78 (69.23%), Postives = 62/78 (79.49%), Query Frame = -1
Query:  315 AAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVL 548
            AAV ENE KL K+LDVYE+RL  SKYL  DSFTL DLHH P +N L+GT VK LFD+RPHVSAW ADI +RPAW+K +
Sbjct:  131 AAVAENEEKLGKVLDVYESRLKDSKYLGGDSFTLADLHHAPAMNYLMGTKVKSLFDSRPHVSAWCADILARPAWSKAI 208          
BLAST of CB304965 vs. ExPASy Swiss-Prot
Match: GST11_ARATH (Glutathione S-transferase 11 OS=Arabidopsis thaliana GN=GST11 PE=1 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 7.478e-26
Identity = 58/76 (76.32%), Postives = 62/76 (81.58%), Query Frame = -1
Query:  315 VEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVL 542
            VEE EAKLAK+LDVYE RL +SKYLA D FTLVDLH +P I  LLGTP KKLFD RPHVSAW ADITSRP+  KVL
Sbjct:  134 VEEEEAKLAKVLDVYEHRLGESKYLASDKFTLVDLHTIPVIQYLLGTPTKKLFDERPHVSAWVADITSRPSAKKVL 209          
BLAST of CB304965 vs. ExPASy Swiss-Prot
Match: GSTF1_ARATH (Glutathione S-transferase 1 OS=Arabidopsis thaliana GN=GST1 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 9.767e-26
Identity = 58/76 (76.32%), Postives = 62/76 (81.58%), Query Frame = -1
Query:  315 VEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVL 542
            VEE EAKLAK+LDVYE RL +SKYLA D FTLVDLH +P I  LLGTP KKLFD RPHVSAW ADITSRP+  KVL
Sbjct:  133 VEEEEAKLAKVLDVYEHRLGESKYLASDHFTLVDLHTIPVIQYLLGTPTKKLFDERPHVSAWVADITSRPSAQKVL 208          
BLAST of CB304965 vs. ExPASy Swiss-Prot
Match: GSTF_SILCU (Glutathione S-transferase OS=Silene cucubalus GN=GST PE=1 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 8.268e-25
Identity = 57/81 (70.37%), Postives = 66/81 (81.48%), Query Frame = -1
Query:  303 VEENEAKLAKILDVYEARLSQSKYL-ACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVLALLK 542
            VEENEAKLAK+LDVYEARL++S+YL A DSFTLVDLHHLP +  L+GT VKKLF+ R HVSAW   I +RP+W K LAL K
Sbjct:  135 VEENEAKLAKVLDVYEARLTESEYLGANDSFTLVDLHHLPLLGYLMGTQVKKLFEERAHVSAWCKKILARPSWEKTLALQK 215          
BLAST of CB304965 vs. ExPASy Swiss-Prot
Match: GSTF6_ARATH (Glutathione S-transferase 6, chloroplastic OS=Arabidopsis thaliana GN=GST6 PE=1 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 3.142e-24
Identity = 55/83 (66.27%), Postives = 66/83 (79.52%), Query Frame = -1
Query:  303 PAAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVLALLK 551
            PAAV+E E KL K+LDVYEARL++S++LA DSFTL DLHHLP I+ LLGT  K LFD+RP VS W   I++RPAWAKV+ L K
Sbjct:  180 PAAVQELEGKLQKVLDVYEARLAKSEFLAGDSFTLADLHHLPAIHYLLGTDSKVLFDSRPKVSEWIKKISARPAWAKVIDLQK 262          
BLAST of CB304965 vs. ExPASy Swiss-Prot
Match: GSTF2_TOBAC (Glutathione S-transferase APIC OS=Nicotiana tabacum GN=APIC PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.142e-24
Identity = 51/81 (62.96%), Postives = 66/81 (81.48%), Query Frame = -1
Query:  303 AVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVLALLK 545
            AV+E+E +L+K+LD+YE RL++SKYL  DSFTLVDLHH+PNI  L+ T VK++FD+RP VSAW ADI +RPAW K L  L+
Sbjct:  132 AVKESEVQLSKVLDIYETRLAESKYLGGDSFTLVDLHHIPNIYYLMSTKVKEVFDSRPRVSAWCADILARPAWVKGLEKLQ 212          
BLAST of CB304965 vs. ExPASy Swiss-Prot
Match: GSTF1_TOBAC (Glutathione S-transferase PARB OS=Nicotiana tabacum GN=PARB PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.142e-24
Identity = 51/82 (62.20%), Postives = 68/82 (82.93%), Query Frame = -1
Query:  303 AAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVLALLK 548
            AAV+E+EA+L+K+LD+YE +L++SKYL  DSFTLVDLHH+PNI  L+ + VK++FD+RP VSAW ADI +RPAW K L  L+
Sbjct:  131 AAVKESEAQLSKVLDIYETQLAESKYLGGDSFTLVDLHHIPNIYYLMSSKVKEVFDSRPRVSAWCADILARPAWVKGLEKLQ 212          
BLAST of CB304965 vs. ExPASy Swiss-Prot
Match: GST16_ARATH (Glutathione S-transferase 16 OS=Arabidopsis thaliana GN=GST16 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.724e-22
Identity = 52/78 (66.67%), Postives = 59/78 (75.64%), Query Frame = -1
Query:  315 AAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVL 548
            A V E EAKLAK+LDVYEARL + KYLA ++FTL DLHH+P I  LLGTP KKLF  RP V+ W A+IT RPA  KVL
Sbjct:  135 AVVAEEEAKLAKVLDVYEARLKEFKYLAGETFTLTDLHHIPVIQYLLGTPTKKLFTERPRVNEWVAEITKRPASEKVL 212          
BLAST of CB304965 vs. ExPASy Swiss-Prot
Match: GSTF4_ARATH (Glutathione S-transferase PM24 OS=Arabidopsis thaliana GN=PM24.1 PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 3.841e-22
Identity = 51/77 (66.23%), Postives = 58/77 (75.32%), Query Frame = -1
Query:  318 AAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKV 548
            A V E EAKLAK+LDVYEARL + KYLA ++FTL DLHH+P I  LLGTP KKLF  RP V+ W A+IT RPA  KV
Sbjct:  135 AVVAEEEAKLAKVLDVYEARLKEFKYLAGETFTLTDLHHIPAIQYLLGTPTKKLFTERPRVNEWVAEITKRPASEKV 211          
BLAST of CB304965 vs. ExPASy Swiss-Prot
Match: GSTF1_ORYSJ (Probable glutathione S-transferase GSTF1 OS=Oryza sativa subsp. japonica GN=GSTF1 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.257e-14
Identity = 38/79 (48.10%), Postives = 52/79 (65.82%), Query Frame = -1
Query:  306 VEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADITSRPAWAKVLALL 542
            V+E+  KL K+L+VYEARLSQS YLA D  +  DL+H P     +GTP   LFD+ PHV AW   + +RP+  K+ A++
Sbjct:  136 VDESAEKLKKVLEVYEARLSQSTYLAGDFVSFADLNHFPYTFYFMGTPYASLFDSYPHVKAWWERLMARPSVKKLAAVM 214          
The following BLAST results are available for this feature:
BLAST of CB304965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
GSTF_HYOMU7.478e-2669.23Glutathione S-transferase OS=Hyoscyamus muticus PE... [more]
GST11_ARATH7.478e-2676.32Glutathione S-transferase 11 OS=Arabidopsis thalia... [more]
GSTF1_ARATH9.767e-2676.32Glutathione S-transferase 1 OS=Arabidopsis thalian... [more]
GSTF_SILCU8.268e-2570.37Glutathione S-transferase OS=Silene cucubalus GN=G... [more]
GSTF6_ARATH3.142e-2466.27Glutathione S-transferase 6, chloroplastic OS=Arab... [more]
GSTF2_TOBAC3.142e-2462.96Glutathione S-transferase APIC OS=Nicotiana tabacu... [more]
GSTF1_TOBAC3.142e-2462.20Glutathione S-transferase PARB OS=Nicotiana tabacu... [more]
GST16_ARATH1.724e-2266.67Glutathione S-transferase 16 OS=Arabidopsis thalia... [more]
GSTF4_ARATH3.841e-2266.23Glutathione S-transferase PM24 OS=Arabidopsis thal... [more]
GSTF1_ORYSJ2.257e-1448.10Probable glutathione S-transferase GSTF1 OS=Oryza ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_H04 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_H04 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304965 ID=CB304965; Name=CB304965; organism=Citrus sinensis; type=EST; length=551bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGCGCAGAATATCTCCAGC
TTCGTTTTATTAGGGTACATAAATAAAATAAAAACCTCAAGCCATCAACA
TCAAAGTTGAATATGAGGCAGTGCTGTTGAAATACAAAAGCGGTAGTACA
AACTACAAAGCATCAATATTCTGCAGAATATTGATGACAAACGCCAAACA
AGAGAATACGAACTCGAAAACCAGCCTAATAGGTATTACAAAAGATAAGT
GACCACCGAGGAGCGACTAACGTCTAGTAGGTAGCGGGCAGAGCGTTCAG
TGTTTGAGCAAGGCAAGGACCTTAGCCCAAGCCGGTCTGGAAGTGATATC
AGCTGCCCATGCGCTAACATGGGGGCGTGCATCAAACAGCTTCTTGACAG
GCGTCCCCAACAACAAATTAATATTGGGGAGATGATGCAAATCGACCAAG
GTGAAGCTGTCGCACGCCAAGTATTTGGACTGAGACAAACGGGCCTCGTA
AACATCTAAAATTTTGGCAAGCTTAGCTTCATTTTCTTCAACCGCAGCTG
G
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