CB304966

Overview
NameCB304966
Unique NameCB304966
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length292
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig361 contig Csv1_Contig361:1..292. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304966 vs. ExPASy Swiss-Prot
Match: FKB70_ARATH (70 kDa peptidyl-prolyl isomerase OS=Arabidopsis thaliana GN=ROF1 PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 5.777e-35
Identity = 70/87 (80.46%), Postives = 79/87 (90.80%), Query Frame = -1
Query:   29 KKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEE 289
            KKGH E E+ FEFKTDEEQV+DGLDRAV+ MKK EVAL+TI PEYAFGS ESQQELAVVPPNSTV YEV+L++F+KE+ESWDMNTEE
Sbjct:  309 KKGHGENEEPFEFKTDEEQVVDGLDRAVMKMKKGEVALVTIDPEYAFGSNESQQELAVVPPNSTVTYEVDLLTFDKERESWDMNTEE 395          
BLAST of CB304966 vs. ExPASy Swiss-Prot
Match: FKB70_WHEAT (70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum GN=FKBP70 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.627e-29
Identity = 64/87 (73.56%), Postives = 74/87 (85.06%), Query Frame = -1
Query:   29 KKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEE 289
            KKGH E+E  FEFKTDEE VI+GLDRAV+ MKK EVAL+TI PEYA+GS ES+Q+ A+VPPNSTV YEVELVSF K+KESWD+N  E
Sbjct:  312 KKGHDEQEP-FEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQD-AIVPPNSTVIYEVELVSFVKDKESWDLNNSE 396          
BLAST of CB304966 vs. ExPASy Swiss-Prot
Match: FKBP4_HUMAN (FK506-binding protein 4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 1.999e-11
Identity = 35/84 (41.67%), Postives = 55/84 (65.48%), Query Frame = -1
Query:   29 EEQLFEFKTDEEQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEE 271
            +++   F+  E + +D   GL+RA+  M+K E +++ + P YAFGS    +E   +PPN+ + YE+ L SFEK KESW+MN+EE
Sbjct:  184 DQRELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVG--KEKFQIPPNAELKYELHLKSFEKAKESWEMNSEE 265          
BLAST of CB304966 vs. ExPASy Swiss-Prot
Match: FKBP4_BOVIN (FK506-binding protein 4 OS=Bos taurus GN=FKBP4 PE=1 SV=4)

HSP 1 Score: 67.0106 bits (162), Expect = 3.410e-11
Identity = 36/89 (40.45%), Postives = 59/89 (66.29%), Query Frame = -1
Query:   29 EEQLFE-----FKTDEEQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEE 271
            ++Q+F+     F+  E + +D   GL++A+  M+K E +++ + P YAFGSA   +E   +PPN+ + YE+ L SFEK KESW+M++EE
Sbjct:  179 KDQVFDRRELRFEVGEGESMDLPCGLEKAIQRMEKGEHSIVYLKPRYAFGSAG--KEKFQIPPNAELKYEIHLKSFEKAKESWEMSSEE 265          
The following BLAST results are available for this feature:
BLAST of CB304966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
FKB70_ARATH5.777e-3580.4670 kDa peptidyl-prolyl isomerase OS=Arabidopsis th... [more]
FKB70_WHEAT3.627e-2973.5670 kDa peptidyl-prolyl isomerase OS=Triticum aesti... [more]
FKBP4_HUMAN1.999e-1141.67FK506-binding protein 4 OS=Homo sapiens GN=FKBP4 P... [more]
FKBP4_BOVIN3.410e-1140.45FK506-binding protein 4 OS=Bos taurus GN=FKBP4 PE=... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIIaR_H05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIIaR_H05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304966 ID=CB304966; Name=CB304966; organism=Citrus sinensis; type=EST; length=292bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTCAGTATTCATGTCCCAC
GATTCCTTCTCCTTTTCAAAGGACACCAGCTCAACCTCATAATGCACAGT
TGAATTAGGAGGTACTACAGCCAGCTCCTGCTGCGACTCAGCCGAGCCAA
AAGCATACTCTGGTGCTATTGTCAGCAGTGCAACCTCATTTTTCTTCATT
GTAATCACTGCTCTATCAAGCCCATCAATGACTTGCTCTTCATCTGTCTT
AAACTCAAACAGCTGCTCTTCCTCACTATGACCCTTTTTCCC
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