CB304978

Overview
NameCB304978
Unique NameCB304978
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length546
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6084 contig Csv1_Contig6084:13..558. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CB304978 vs. ExPASy Swiss-Prot
Match: CCMF_ARATH (Putative cytochrome c biogenesis ccmF-like mitochondrial protein OS=Arabidopsis thaliana GN=CCMFC PE=2 SV=2)

HSP 1 Score: 287.73 bits (735), Expect = 2.416e-77
Identity = 136/161 (84.47%), Postives = 140/161 (86.96%), Query Frame = -1
Query:   61 ERCCLRGLDHLHGPTFHSICGNLMIYKPSLRNDRLMFEHDESLRADLLLINFPASYENGKLEHFLHRWMKNREHNNFWLTMYPEKRYFRETTSTTEVAIHTNLFTDLYASIVTGSSKTGGWYTPIMKLPFIFFIWIGFMLAXXXXXXXXXXXXQKDKLRWN 543
            ERCCLRGLDHLHGPTFHSICGNLMIYK SL NDRLMFEHDESL ADLLLINFPASY+NGKLEHFLH WMKNR+HNNFWLTM+PEKRYFRE TST EVAIHTNLFTDLYA I TGSS+TGGWYT IMKLPFIFFIWIGFMLA            QKDKLRWN
Sbjct:  282 ERCCLRGLDHLHGPTFHSICGNLMIYKSSLTNDRLMFEHDESLHADLLLINFPASYKNGKLEHFLHWWMKNRKHNNFWLTMFPEKRYFRERTSTAEVAIHTNLFTDLYALIGTGSSRTGGWYTTIMKLPFIFFIWIGFMLASLGGLPSLLRQLQKDKLRWN 442          
BLAST of CB304978 vs. ExPASy Swiss-Prot
Match: YMF02_MARPO (Uncharacterized mitochondrial protein ymf2 OS=Marchantia polymorpha GN=YMF2 PE=4 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.388e-32
Identity = 90/197 (45.69%), Postives = 109/197 (55.33%), Query Frame = -1
Query:   61 RCCLRGLDHLHGPTFHSICGNLMIYKPSLRNDRLMFEHDESLRADLLLINFPAS----YENGK----------------------LEHFLHRWMKNR-------EHNNF--WLTMYPEKRYF--RETTSTTEVAIHTNLFTDLYASIVTGSSKTGGWYTPIMKLPFIFFIWIGFMLAXXXXXXXXXXXXQKDKLRWN 540
            R  LRG+D LHGPTFHSICGN +IYKPSL+    MFEHD S  A  LL + P        NG+                         F H  +  R       EHN+F  WLTM+PEKR++   + TSTT+VAIHTNLFTDLYA I TGS +T GWY  ++KLPFIF+IWIGF++A               +L WN
Sbjct:  130 RSTLRGIDQLHGPTFHSICGNFIIYKPSLKTP-FMFEHDGSRPA--LLQSRPTEGAKVSTNGRGFSSRPTGEGNFFGPKGRRPEMALGFPHTSLPLRKKGFTVLEHNSFSHWLTMFPEKRFYFSNQETSTTKVAIHTNLFTDLYALIGTGSFET-GWYMTVIKLPFIFYIWIGFIMASLGGLLSLFRKLTFYRLDWN 322          
The following BLAST results are available for this feature:
BLAST of CB304978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CCMF_ARATH2.416e-7784.47Putative cytochrome c biogenesis ccmF-like mitocho... [more]
YMF02_MARPO1.388e-3245.69Uncharacterized mitochondrial protein ymf2 OS=Marc... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_A11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_A11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304978 ID=CB304978; Name=CB304978; organism=Citrus sinensis; type=EST; length=546bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAATTATGAAACTCCACGG
AACTTTCTCAATTCCAACGCAACTTATCCTTTTGGAGCTGACGTAACAAA
CTACGCAAGCCTCCCAACGAAGCCAACATAAATCCTATCCAAATAAAAAA
AATAAAAGGAAGTTTCATTATGGGGGTATACCAGCCTCCTGTTTTGGAAC
TTCCAGTTACAATCGAAGCATATAAATCTGTAAATAGATTTGTATGTATA
GCCACTTCAGTCGTGCTCGTCGTTTCTCGAAAGTATCTTTTTTCTGGGTA
CATGGTCAACCAAAAATTATTATGTTCGCGATTCTTCATCCACCGATGCA
GAAAATGCTCCAGTTTTCCATTCTCATATGAGGCAGGAAAGTTTATTAGC
AACAGGTCGGCGCGAAGTGATTCATCATGCTCAAACATGAGCCGATCGTT
CCTTAGGGACGGTTTATAGATCATCAAATTCCCACAAATGGAATGAAAAG
TAGGTCCATGTAAATGATCGAGACCTCGCAAACAACAACGCTCCCC
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