CB304979

Overview
NameCB304979
Unique NameCB304979
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1497 contig Csv1_Contig1497:490..1094. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB304979 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.413e-34
Identity = 76/109 (69.72%), Postives = 85/109 (77.98%), Query Frame = -2
Query:  278 MSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 604
            MSLKQIRSTRTQ MLD L +LQ KE  L+EAN+TLKQRLMEG  +N LQ   +A+D GYG +  Q QGD FFH LECEPTLQIGYQ  DPI+V  AGPS+NNYM GWLP
Sbjct:  135 MSLKQIRSTRTQLMLDQLQDLQRKEHALNEANRTLKQRLMEGSTLN-LQWQQNAQDVGYGRQATQTQGDGFFHPLECEPTLQIGYQ-NDPITVGGAGPSVNNYMAGWLP 241          
BLAST of CB304979 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.481e-33
Identity = 75/111 (67.57%), Postives = 83/111 (74.77%), Query Frame = -2
Query:  278 SLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGYGLK-PAQPQGDSFFHA--LECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 601
            SLKQIRSTRTQ+MLD L +LQ KE LL EAN+ L+QR MEGYQ+N+LQLN SAED GYG        GD  F    +ECEPTLQIGY   DP SVVTAGPS+NNYM GWLP
Sbjct:  138 SLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQR-MEGYQINSLQLNLSAEDMGYGRHHQGHTHGDELFQVQPIECEPTLQIGYHQGDPGSVVTAGPSMNNYMGGWLP 247          
BLAST of CB304979 vs. ExPASy Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.326e-24
Identity = 62/110 (56.36%), Postives = 78/110 (70.91%), Query Frame = -2
Query:  281 SLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQL-NPS-AEDCGYGLKPAQPQGDSFFHALECEPTLQIGYQPADPISVVTAGPSLNNYM-QGWL 601
            SL+QIRSTRTQ+MLD L +LQ +EQ+L EANKTLK+R  E  Q N  Q+ +PS     GYG +PAQ  G++F+H LECEPTLQIGY     ++  TA  ++NNYM  GWL
Sbjct:  134 SLRQIRSTRTQFMLDQLADLQRREQMLCEANKTLKRRFEESSQANQQQVWDPSNTHAVGYGRQPAQHHGEAFYHPLECEPTLQIGYHSDITMATATAS-TVNNYMPPGWL 242          
BLAST of CB304979 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.857e-24
Identity = 63/111 (56.76%), Postives = 77/111 (69.37%), Query Frame = -2
Query:  278 SLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCG-YGLKPAQPQ--GDSFFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 601
            SLKQIR+ RTQ+MLD L +LQ KE++L+E NKTL+ RL +GYQ+  LQLNP+ E+   YG    Q Q    +FF  LECEP LQIGYQ       + AGPS+NNYM GWLP
Sbjct:  138 SLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLADGYQM-PLQLNPNQEEVDHYGRHHHQQQQHSQAFFQPLECEPILQIGYQGQQ--DGMGAGPSVNNYMLGWLP 245          
BLAST of CB304979 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.857e-24
Identity = 64/113 (56.64%), Postives = 77/113 (68.14%), Query Frame = -2
Query:  278 SLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAED--CGYGLKPAQPQGDS---FFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 601
            SLKQIR+ RTQ+MLD L +LQ KE++L+E NKTL+ RL +GYQ+  LQLNP+ ED    YG    Q Q +S   FF  LECEP LQ+GYQ       + AGPS NNYM GWLP
Sbjct:  138 SLKQIRALRTQFMLDQLNDLQSKERMLNETNKTLRLRLADGYQM-PLQLNPNQEDHHVDYGRHDQQQQQNSHHAFFQPLECEPILQMGYQGQQDHG-MEAGPSENNYMLGWLP 248          
BLAST of CB304979 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSJ (MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.273e-15
Identity = 50/115 (43.48%), Postives = 70/115 (60.87%), Query Frame = -2
Query:  278 SLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQL-NPSAEDCGYGLKPAQPQ----GDSFFHALEC--EPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 601
            SLK +R+TRT++++D LTELQ KEQ++SEAN+ L+++L E   V   Q+        GY  +P   Q    G+ FFH L+   EPTLQIGY PA+    + +   +N YM  WLP
Sbjct:  137 SLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHVRGQQVWEQGCNLIGYERQPEVQQPLHGGNGFFHPLDAAGEPTLQIGY-PAEHHEAMNSA-CMNTYMPPWLP 249          
BLAST of CB304979 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSI (MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.273e-15
Identity = 50/115 (43.48%), Postives = 70/115 (60.87%), Query Frame = -2
Query:  278 SLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQL-NPSAEDCGYGLKPAQPQ----GDSFFHALEC--EPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 601
            SLK +R+TRT++++D LTELQ KEQ++SEAN+ L+++L E   V   Q+        GY  +P   Q    G+ FFH L+   EPTLQIGY PA+    + +   +N YM  WLP
Sbjct:  137 SLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESNHVRGQQVWEQGCNLIGYERQPEVQQPLHGGNGFFHPLDAAGEPTLQIGY-PAEHHEAMNSA-CMNTYMPPWLP 249          
BLAST of CB304979 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.691e-15
Identity = 35/46 (76.09%), Postives = 39/46 (84.78%), Query Frame = -2
Query:  467 MSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVN 604
            MSLKQIRSTRTQ MLD LT+ Q KE  L+EAN+TLKQRLMEG Q+N
Sbjct:  135 MSLKQIRSTRTQLMLDQLTDYQRKEHALNEANRTLKQRLMEGSQLN 180          

HSP 2 Score: 31.187 bits (69), Expect = 4.691e-15
Identity = 16/31 (51.61%), Postives = 19/31 (61.29%), Query Frame = -3
Query:  355 VQKIVVMGLNQLNLRAIASFTPWNVNPHCKL 447
            + K+  M   QL LRA+ASF  W VN  CKL
Sbjct:  186 MHKLWAMAGKQLKLRAMASFILWIVNLLCKL 216          
BLAST of CB304979 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.771e-14
Identity = 53/118 (44.92%), Postives = 69/118 (58.47%), Query Frame = -2
Query:  278 SLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAEDCGY------GLKPAQPQ-GDSFFHALE--CEPTLQIGYQPAD-PISVVTAGPSLNNYMQGWLP 601
            SL+ IRSTRTQ+MLD LT+LQ +EQ+L EANK L+++L E  Q++       A   GY       ++   P  G+ FFH+LE   EPTLQIG+ P     S VTA      +M  WLP
Sbjct:  137 SLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLRRKLEESNQLHGQVWEHGATLLGYERQSPHAVQQVPPHGGNGFFHSLEAAAEPTLQIGFTPEQMNNSCVTA------FMPTWLP 248          
BLAST of CB304979 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.986e-12
Identity = 45/117 (38.46%), Postives = 65/117 (55.56%), Query Frame = -2
Query:  281 SLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRLMEGYQVNTLQLNPSAE-----DCGYGLKPAQPQGDSFFHALECEPTLQIGYQP---ADPISVVTAGPSL--NNYMQGWL 601
            SLKQ+R  +TQYMLD L++LQ KE +L +AN+ L  +L +   V    +    E     +  YG   A  QG   + +LEC+PTLQIGY     ++ ++V   G S   N Y+ GW+
Sbjct:  135 SLKQVRCIKTQYMLDQLSDLQGKEHILLDANRALSMKLEDMIGVRHHHIGGGWEGGDQQNIAYGHPQAHSQG--LYQSLECDPTLQIGYSHPVCSEQMAVTVQGQSQQGNGYIPGWM 249          
The following BLAST results are available for this feature:
BLAST of CB304979 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
AGL9_PETHY1.413e-3469.72Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]
MTF1_PEA3.481e-3367.57MADS-box transcription factor 1 OS=Pisum sativum G... [more]
AGL9_ARADE1.326e-2456.36Agamous-like MADS-box protein AGL9 homolog OS=Aran... [more]
SEP3_ARATH3.857e-2456.76Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
AGL9_SINAL3.857e-2456.64Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]
MADS7_ORYSJ3.273e-1543.48MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MADS7_ORYSI3.273e-1543.48MADS-box transcription factor 7 OS=Oryza sativa su... [more]
AGL9_SOLLC4.691e-1576.09Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]
MADS8_ORYSJ2.771e-1444.92MADS-box transcription factor 8 OS=Oryza sativa su... [more]
SEP2_ARATH1.986e-1238.46Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_A12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_A12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304979 ID=CB304979; Name=CB304979; organism=Citrus sinensis; type=EST; length=605bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTCTCAAACAAGGCTTTGTT
AAATAAAGATAAGCGCGGTGATTGAAAATACACGCACACACGACATAGCT
ATATATCGTCATCAGTTTCCCTAAAGTGCAGGATCACTGTAGAGTTATTA
TAATAAATCCTTATGATTGCGTGTTCCTAGTCACTGAATAGGGTTGCTTA
CAAAGGGATACAAAGTTGCTGATTCTTATGGATCAACTACAATACATTGA
CTGGTAATGCCCGCCGCTCTCTTAGCATGGTAGCCATCCTTGCATGTAAT
TATTCAGACTCGGGCCTGCTGTGACAACCGATATTGGGTCCGCAGGCTGG
TATCCAATTTGCAATGTGGGTTCACATTCCAAGGCGTGAAAGAAGCTATC
GCCCTGAGGTTGAGCTGGTTTAAGCCCATAACCACAATCTTCTGCACTAG
GATTCAATTGAAGTGTGTTCACTTGGTATCCCTCCATCAACCTTTGTTTG
AGGGTCTTATTTGCTTCGCTCAGCAACTGTTCCTTATGTTGCAGTTCAGT
AAGGGTATCCAGCATGTACTGAGTTCTTGTTGATCTGATCTGCTTCAATG
ACATA
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