CB304982

Overview
NameCB304982
Unique NameCB304982
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304982 vs. ExPASy Swiss-Prot
Match: NOC3L_DANRE (Nucleolar complex protein 3 homolog OS=Danio rerio GN=noc3l PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.025e-20
Identity = 60/187 (32.09%), Postives = 97/187 (51.87%), Query Frame = -1
Query:   98 KLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKL-----------------IASEKQPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGAATVEAVRLIANHEKVKNCQLHPDFVEVFMSLPFDEDLQRREVPD 607
            KL  +SL+ VFKDI+P YRIR  TE+E   KV KE  ++R +E  L+S YK YL++L                 ++ +      +V VRCIC LL A+PHFN    ++ ++V  +   D  V ++CC  +K L   +    G A++  V++I+   K +N ++ P  +   + L   E   +++  D
Sbjct:  256 KLVMVSLMEVFKDIVPAYRIRPLTEEEKAAKVKKETLQLREFEEGLVSQYKFYLEELEQTVKDWKQKKEKRSQAVSLQSYKGLAEVAVRCICELLVALPHFNFHNNIIVMLVPLMNDSDKKVSEMCCEAVKKLLKQD--KVGQASLAMVKVISGMVKSRNYRIKPVVLNCLLCLRIKEVDMKKDTED 440          
BLAST of CB304982 vs. ExPASy Swiss-Prot
Match: NOC3L_CRIGR (Nucleolar complex protein 3 homolog OS=Cricetulus griseus GN=NOC3L PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.313e-19
Identity = 55/187 (29.41%), Postives = 98/187 (52.41%), Query Frame = -1
Query:   98 KLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKL-----------------IASEKQPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGAATVEAVRLIANHEKVKNCQLHPDFVEVFMSLPFDEDLQRREVPD 607
            KL  +SL+ +FKDI P Y+IR  TE E   K+ KE +K+R +E  L+S YK YL+ L                 ++ +      +V V+ +C LL A+PHFN    ++ ++V  +     +V ++CC  +K LF  +    G A++  +++I+   K +N ++ P+ ++ F+ L   E   +++  D
Sbjct:  256 KLVIISLMELFKDITPSYKIRPLTEAEKSTKIRKETQKLREFEEGLVSQYKFYLENLEQIVKDWKQRKLKKSNVVSLKAYKGLAEVAVKSLCELLVALPHFNFHNNIIVLIVPLMNDGSKLVSEMCCEAVKKLFKQDKL--GQASLGVIKVISGFVKGRNYEVRPEMLKTFLCLRIKEVEVKKDTED 440          
BLAST of CB304982 vs. ExPASy Swiss-Prot
Match: NOC3L_MOUSE (Nucleolar complex protein 3 homolog OS=Mus musculus GN=Noc3l PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19
Identity = 55/187 (29.41%), Postives = 97/187 (51.87%), Query Frame = -1
Query:   98 KLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKL-----------------IASEKQPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGAATVEAVRLIANHEKVKNCQLHPDFVEVFMSLPFDEDLQRREVPD 607
            KL  +SL+ +FKDI P Y+IR  TE E   K+ KE +K+R +E  L+S YK YL+ L                 ++ +      +V V+ +C LL A+PHFN    ++ ++V  +      V ++CC  +K LF  +    G A++  +++I+   K +N ++ P+ ++ F+ L   E   +++  D
Sbjct:  255 KLVIISLMELFKDITPSYKIRPLTEAEKSTKIRKETQKLREFEEGLVSQYKFYLENLEQIVKDWKQRKLKKSNVVSLKAYKGLAEVAVKSLCELLVALPHFNFHNNIIVLIVPLMNDGSKPVSEMCCEAVKKLFKQDKL--GQASLGVIKVISGFVKGRNYEVRPEMLKTFLCLRIKEVEVKKDTED 439          
BLAST of CB304982 vs. ExPASy Swiss-Prot
Match: NOC3L_HUMAN (Nucleolar complex protein 3 homolog OS=Homo sapiens GN=NOC3L PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.924e-19
Identity = 54/187 (28.88%), Postives = 97/187 (51.87%), Query Frame = -1
Query:   98 KLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKL-----------------IASEKQPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGAATVEAVRLIANHEKVKNCQLHPDFVEVFMSLPFDEDLQRREVPD 607
            KL  +SL+ +FKDI P Y+IR  TE E   K  KE +K+R +E  L+S YK YL+ L                 ++ +      +V V+ +C LL A+PHFN    ++ ++V  +     ++ ++CC  +K LF  +    G A++  +++I+   K +N ++ P+ ++ F+ L   E   +++  D
Sbjct:  256 KLVIVSLMELFKDITPSYKIRPLTEAEKSTKTRKETQKLREFEEGLVSQYKFYLENLEQMVKDWKQRKLKKSNVVSLKAYKGLAEVAVKSLCELLVALPHFNFHNNIIVLIVPLMNDMSKLISEMCCEAVKKLFKQDKL--GQASLGVIKVISGFVKGRNYEVRPEMLKTFLCLRIKEVEVKKDTED 440          
BLAST of CB304982 vs. ExPASy Swiss-Prot
Match: NOC3L_PONAB (Nucleolar complex protein 3 homolog OS=Pongo abelii GN=NOC3L PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.233e-18
Identity = 53/187 (28.34%), Postives = 95/187 (50.80%), Query Frame = -1
Query:   98 KLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKL-----------------IASEKQPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGAATVEAVRLIANHEKVKNCQLHPDFVEVFMSLPFDEDLQRREVPD 607
            KL  +SL+ +FKDI P Y+IR  TE E   K  KE +K+R +E  L+S YK YL+ L                 ++ +      +V V+ +C LL A+PHFN    ++ ++V  +      + ++CC  +K LF  +    G A++  +++I+   K +  ++ P+ ++ F+ L   E   +++  D
Sbjct:  256 KLVIVSLMELFKDITPSYKIRPLTEAEKSTKTRKETQKLREFEEGLVSQYKFYLENLEQMVKDWKQRKLKKSNVVSLKAYKGLAEVAVKSLCELLVALPHFNFHNNIIVLIVPLMNDMSKSISEMCCEAVKKLFKQDKL--GQASLGVIKVISGFVKGRKYEVRPEMLKTFLCLRIKEVEVKKDTED 440          
BLAST of CB304982 vs. ExPASy Swiss-Prot
Match: NOC3_SCHPO (Nucleolar complex-associated protein 3 OS=Schizosaccharomyces pombe GN=noc3 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.203e-18
Identity = 61/182 (33.52%), Postives = 96/182 (52.75%), Query Frame = -1
Query:  107 KLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKL---------IASEKQPVFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQ------DVVVRKLCCATIKSLFTNEGKHGGAATVEAVRLIANHEKVKNCQLHPDFVEVFMSLPFDEDLQRRE 607
            KL  L+LLAVF+DIIPGY+IR  +E+E   K+SKEV +   YE TLL  Y  +LQ L            E Q   +QV VRC   L++   HFN  E L  + VR +  +      D ++  L     K++F  E  + G  +++ V +++   K +N  + PD  ++F+S+    D++ ++
Sbjct:  258 KLSLLTLLAVFRDIIPGYKIRPLSEEEQGTKLSKEVAQRWEYEQTLLKHYAKFLQTLETILKSFSSTLDETQLSLYQVAVRCCTKLIEQASHFNLSEKLFALAVRQISHKTKRPGFDGIINSL-----KNIF--EEDNLGKTSLKCVTILSRMFKQRNYDVLPDVYDLFLSVNILNDMKIKD 432          
BLAST of CB304982 vs. ExPASy Swiss-Prot
Match: NOC3L_XENLA (Nucleolar complex protein 3 homolog OS=Xenopus laevis GN=noc3l PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.150e-15
Identity = 54/187 (28.88%), Postives = 97/187 (51.87%), Query Frame = -1
Query:   98 KLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKL---------IASEKQPV--------FHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFTNEGKHGGAATVEAVRLIANHEKVKNCQLHPDFVEVFMSLPFDEDLQRREVPD 607
            KL  LSL+ VFKDI P Y+IR  TE E   +V K+ +K+R +E  L+S YK YL+ L         + ++K  V          ++ V+C+C L+ ++ HFN    ++ +VV  +  +   + +L     + LF  +    G A++ AV++I+   K +N  + P+ +++ + L   E   +++  D
Sbjct:  254 KLVMLSLMEVFKDITPSYKIRPLTEAEKAARVKKDTQKLREFEEGLISQYKFYLENLEQILKDWKQMKTKKSEVVSLHAYKGLAEIAVKCLCELMVSLSHFNFHNNIIVLVVPLVNDKCRQISELSMEATRKLFRQD--KFGHASLAAVKVISGLVKSRNYDVRPEVLQLLLHLRIKEVEVKKDTED 438          
BLAST of CB304982 vs. ExPASy Swiss-Prot
Match: NOC3_YEAST (Nucleolar complex-associated protein 3 OS=Saccharomyces cerevisiae GN=NOC3 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.530e-11
Identity = 49/167 (29.34%), Postives = 79/167 (47.31%), Query Frame = -1
Query:  137 KLGFLSLLAVFKDIIPGYRIRLPTEKELEMKVSKEVKKMRFYESTLLSAYKAYLQKLIASEKQP--------VFHQVVVRCICNLLDAVPHFNCCEILLEVVVRNLGSQDVVVRKLCCATIKSLFT--NEGKHGGAATVEAVRLIANHEKVKNCQLHPDFVEVFMSL 607
            K   L+L+ VFK IIPGYRIR  TE E + KVSKEV K+R +E  L+  YK Y+ +L +  K P            +  +    L+    HFN    +  +++R +    +         I++  T  NE +  G+ + E +R+     K +N  +    + + +SL
Sbjct:  175 KFSMLALVPVFKSIIPGYRIRPLTETEKKEKVSKEVSKLRNFEQALVYNYKNYVGRLQSLSKTPSNAAPIQVSLGILATQAAKELISTASHFNFRTDIFTLLLRRICKPRISTDPTSIQIIQTFETLLNEDEE-GSISFEILRIFNKILKTRNFNIEESVLNMLLSL 340          
The following BLAST results are available for this feature:
BLAST of CB304982 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
NOC3L_DANRE2.025e-2032.09Nucleolar complex protein 3 homolog OS=Danio rerio... [more]
NOC3L_CRIGR1.313e-1929.41Nucleolar complex protein 3 homolog OS=Cricetulus ... [more]
NOC3L_MOUSE2.924e-1929.41Nucleolar complex protein 3 homolog OS=Mus musculu... [more]
NOC3L_HUMAN2.924e-1928.88Nucleolar complex protein 3 homolog OS=Homo sapien... [more]
NOC3L_PONAB3.233e-1828.34Nucleolar complex protein 3 homolog OS=Pongo abeli... [more]
NOC3_SCHPO7.203e-1833.52Nucleolar complex-associated protein 3 OS=Schizosa... [more]
NOC3L_XENLA1.150e-1528.88Nucleolar complex protein 3 homolog OS=Xenopus lae... [more]
NOC3_YEAST6.530e-1129.34Nucleolar complex-associated protein 3 OS=Saccharo... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_B05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_B05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304982 ID=CB304982; Name=CB304982; organism=Citrus sinensis; type=EST; length=610bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAATTGGCTAGGCCCCTCA
ATGCTCTTTCTTTTATTATTTTTCTTGTTCTTAACTTTGCTCTTATCATC
TGGCACTTCACGTCTCTGAAGATCTTCATCAAATGGTAAGGACATAAATA
CCTCAACAAAATCAGGATGCAATTGACAATTTTTAACTTTCTCATGGTTT
GCAATCAATCGAACTGCCTCAACAGTAGCCGCACCACCATGTTTTCCTTC
GTTGGTAAAAAGTGACTTGATTGTAGCACAACAAAGTTTCCTCACAACAA
CATCCTGGGAGCCTAGGTTTCTGACAACAACCTCCAACAGGATCTCACAG
CAGTTAAAGTGGGGAACTGCATCAAGCAAATTGCAAATGCAACGAACAAC
CACTTGGTGAAACACAGGCTGCTTTTCTGATGCTATCAACTTCTGGAGGT
ATGCCTTGTAAGCGGATAAAAGTGTTGATTCATAAAATCGCATCTTCTTA
ACCTCCTTGGAAACCTTCATCTCTAGCTCTTTTTCAGTTGGAAGCCTAAT
CCGGTAGCCAGGAATAATGTCTTTGAAAACAGCCAACAATGACAGAAACC
CAAGTTTGGA
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