CB304992

Overview
NameCB304992
Unique NameCB304992
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB304992 vs. ExPASy Swiss-Prot
Match: F10C1_HUMAN (Protein FRA10AC1 OS=Homo sapiens GN=FRA10AC1 PE=1 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 2.818e-49
Identity = 90/169 (53.25%), Postives = 123/169 (72.78%), Query Frame = -3
Query:   31 SKIFDREERKQQYQAQIRGLNAYDRHNKFLKDYVAFYGKEKPMSLKLPV--KTDQDTLREGFRFIRSEEDDKDSSWEQRLVKRYYDKLFKEYCIADMLHYKSGKIGLRWRTEKEVIAGKGQFVCGNKHCDEKDGLASYEVNFTYVEAGENKQALVKLVTCERCAEKLHY 531
            +++ DREE + + +  +  ++AY RH KF+ DY+ +YG +K    +L    KTD D +RE  RF+ +EED+ D +WE+RL K+YYDKLFKEYCIAD+  YK  K G RWR EKEVI+GKGQF CGNK+CD+K+GL S+EVNF Y+E GE + ALVKL  C+ C+ KL++
Sbjct:   53 AELLDREEARNR-RFHLIAMDAYQRHRKFVNDYILYYGGKKEDFKRLGENDKTDLDVIRENHRFLWNEEDEMDMTWEKRLAKKYYDKLFKEYCIADLSKYKENKFGFRWRVEKEVISGKGQFFCGNKYCDKKEGLKSWEVNFGYIEHGEKRNALVKLRLCQECSIKLNF 220          
BLAST of CB304992 vs. ExPASy Swiss-Prot
Match: F10C1_RAT (Protein FRA10AC1 homolog OS=Rattus norvegicus GN=Fra10ac1 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.116e-48
Identity = 90/167 (53.89%), Postives = 119/167 (71.26%), Query Frame = -3
Query:   31 IFDREERKQQYQAQIRGLNAYDRHNKFLKDYVAFYGKEKPMSLKLPV--KTDQDTLREGFRFIRSEEDDKDSSWEQRLVKRYYDKLFKEYCIADMLHYKSGKIGLRWRTEKEVIAGKGQFVCGNKHCDEKDGLASYEVNFTYVEAGENKQALVKLVTCERCAEKLHY 525
            + DREE + + +  +  ++AY RH KF+ DY+ +YG ++    +L    KTD D +RE  RF+ +EED+ D +WE+RL K+YYDKLFKEYCIAD+  YK  K G RWR EKEVI+GKGQF CGNK CDEK+GL S+EVNF Y E GE + ALVKL  C+ C+ KL++
Sbjct:   55 LLDREEARNR-RFHLIAMDAYQRHTKFVNDYILYYGGKREDFKRLGENDKTDLDVIRENHRFLWNEEDEADMTWEKRLAKKYYDKLFKEYCIADLSRYKENKFGFRWRIEKEVISGKGQFFCGNKCCDEKEGLKSWEVNFGYTEHGEKRNALVKLRLCQECSFKLNF 220          
BLAST of CB304992 vs. ExPASy Swiss-Prot
Match: F10C1_MOUSE (Protein FRA10AC1 homolog OS=Mus musculus GN=Fra10ac1 PE=1 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.184e-47
Identity = 89/167 (53.29%), Postives = 119/167 (71.26%), Query Frame = -3
Query:   31 IFDREERKQQYQAQIRGLNAYDRHNKFLKDYVAFYGKEKPMSLKLPV--KTDQDTLREGFRFIRSEEDDKDSSWEQRLVKRYYDKLFKEYCIADMLHYKSGKIGLRWRTEKEVIAGKGQFVCGNKHCDEKDGLASYEVNFTYVEAGENKQALVKLVTCERCAEKLHY 525
            + DREE + + +  +  ++AY RH KF+ DY+ +YG ++    +L    KTD D +RE  RF+ +EED+ D +WE+RL K+YYDKLFKEYCIAD+  YK  K G RWR EKEVI+GKGQF CGNK C+EK+GL S+EVNF Y E GE + ALVKL  C+ C+ KL++
Sbjct:   55 LLDREEARNR-RFHLIAMDAYQRHTKFVNDYILYYGGKREDFKRLGENDKTDLDVIRENHRFLWNEEDEADMTWEKRLAKKYYDKLFKEYCIADLSRYKENKFGFRWRIEKEVISGKGQFFCGNKCCNEKEGLRSWEVNFGYTEHGEKRNALVKLRLCQECSFKLNF 220          
The following BLAST results are available for this feature:
BLAST of CB304992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
F10C1_HUMAN2.818e-4953.25Protein FRA10AC1 OS=Homo sapiens GN=FRA10AC1 PE=1 ... [more]
F10C1_RAT3.116e-4853.89Protein FRA10AC1 homolog OS=Rattus norvegicus GN=F... [more]
F10C1_MOUSE1.184e-4753.29Protein FRA10AC1 homolog OS=Mus musculus GN=Fra10a... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IIaR_C12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_C12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB304992 ID=CB304992; Name=CB304992; organism=Citrus sinensis; type=EST; length=626bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAATGAAGCTTCTCCGCAC
ATCTTTCACAAGTTACCAATTTCACAAGTGCTTGTTTATTTTCTCCAGCT
TCGACGTAAGTAAAGTTCACCTCATAGCTTGCTAGGCCATCTTTTTCATC
ACAATGTTTGTTACCACATACGAACTGCCCTTTGCCGGCTATAACCTCCT
TCTCTGTCCTCCATCTCAAACCAATCTTGCCACTCTTGTAATGCAACATG
TCGGCTATGCAATATTCTTTAAAAAGCTTATCATAATAACGCTTCACTAG
CCTCTGTTCCCACGATGAATCCTTATCATCTTCTTCAGAACGTATGAATC
GAAATCCTTCTCGTAGAGTGTCTTGATCAGTTTTAACAGGTAACTTAAGA
CTCATAGGCTTTTCTTTCCCATAAAAGGCAACGTAATCTTTTAAGAATTT
ATTGTGGCGATCATAGGCATTGAGTCCTCGAATTTGCGCTTGGTACTGCT
GCTTTCTCTCTTCTCTATCGAAGATTTTGGACTTGAGAGAGCCGAAAGAG
GCCATGTTTCATTGCTTTCAAGACGAATGATCGGCTGATAGAAGAAATTA
AATTCGACTTCGAGTTCGACAAAGGC
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