CB305000 | Citrus Genome Database

Overview


Name	CB305000
Unique Name	CB305000
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	419

Libraries


Library Name	Type
Flavedo Mature	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1946	contig	Csv1_Contig1946:641..1059.	BLAST: Citrus Unigene V1 Contigs to TAIR9

Homology

[Close]

BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_CITSI (Maturase K OS=Citrus sinensis GN=matK PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 2.058e-69
Identity = 126/129 (97.67%), Postives = 126/129 (97.67%), Query Frame = -1

Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLVGLWQ HF ASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDT VPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS
Sbjct:  293 LMNKWKYYLVGLWQWHFHASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTTVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 421

[Close]

BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_KOEPA (Maturase K OS=Koelreuteria paniculata GN=matK PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 4.310e-51
Identity = 98/129 (75.97%), Postives = 111/129 (86.05%), Query Frame = -1

Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV LWQ HF   SQPGRV +NHL+  KY+INFLGYLS  RLN+L+VRSQMLEN+FLI+N MKK +TAVPII LI SLTKARFCN L +PISK TW+D SDSH+I+RFVRICRNLSHY+SGS
Sbjct:  293 LMNKWKYYLVNLWQWHFHVWSQPGRVHINHLH--KYSINFLGYLSRGRLNTLVVRSQMLENAFLIENVMKKFETAVPIISLIESLTKARFCNPLXNPISKPTWADSSDSHIINRFVRICRNLSHYHSGS 419

[Close]

BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_AESPA (Maturase K OS=Aesculus pavia GN=matK PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 5.629e-51
Identity = 99/129 (76.74%), Postives = 109/129 (84.50%), Query Frame = -1

Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV LWQ HF    Q GRV +NHLY  K  INFLGYLS  RLN+L+VRSQMLEN+FLIDN+MKK +T +PII LIGSLTKARFCN LGHPISK TW+D SDSH+IDRFVRICRNLSHY+SGS
Sbjct:  300 LMNKWKYYLVNLWQWHFRVWFQLGRVHINHLY--KDYINFLGYLSIGRLNTLVVRSQMLENAFLIDNAMKKFETTLPIIPLIGSLTKARFCNPLGHPISKLTWADSSDSHIIDRFVRICRNLSHYHSGS 426

[Close]

BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_ACEPL (Maturase K OS=Acer platanoides GN=matK PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 7.352e-51
Identity = 96/129 (74.42%), Postives = 111/129 (86.05%), Query Frame = -1

Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV LWQ HF   SQPGR+ +NHLY  K  I+FLGYLS  RLN+L+VRSQMLEN+FLIDN+MK+ +T VPII LIGSLT ARFCN+LGHPISK TW+D SDS++IDRF+RICRNLSHY+SGS
Sbjct:  293 LMNKWKYYLVNLWQWHFHVWSQPGRIHINHLY--KDYIDFLGYLSRGRLNTLVVRSQMLENAFLIDNAMKQFETTVPIIPLIGSLTTARFCNSLGHPISKPTWADSSDSYIIDRFMRICRNLSHYHSGS 419

[Close]

BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_ACEOP (Maturase K OS=Acer opalus GN=matK PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 7.352e-51
Identity = 96/129 (74.42%), Postives = 111/129 (86.05%), Query Frame = -1

Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV LWQ HF   SQPGR+ +NHLY  K  I+FLGYLS  RLN+L+VRSQMLEN+FLIDN+MK+ +T VPII LIGSLT ARFCN+LGHPISK TW+D SDS++IDRF+RICRNLSHY+SGS
Sbjct:  295 LMNKWKYYLVNLWQWHFHVWSQPGRIHINHLY--KDYIDFLGYLSRGRLNTLVVRSQMLENAFLIDNAMKQFETTVPIIPLIGSLTTARFCNSLGHPISKPTWADSSDSYIIDRFMRICRNLSHYHSGS 421

[Close]

BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_ACEMO (Maturase K OS=Acer monspessulanum GN=matK PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 7.352e-51
Identity = 96/129 (74.42%), Postives = 111/129 (86.05%), Query Frame = -1

Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV LWQ HF   SQPGR+ +NHLY  K  I+FLGYLS  RLN+L+VRSQMLEN+FLIDN+MK+ +T VPII LIGSLT ARFCN+LGHPISK TW+D SDS++IDRF+RICRNLSHY+SGS
Sbjct:  295 LMNKWKYYLVNLWQWHFHVWSQPGRIHINHLY--KDYIDFLGYLSRGRLNTLVVRSQMLENAFLIDNAMKQFETTVPIIPLIGSLTTARFCNSLGHPISKPTWADSSDSYIIDRFMRICRNLSHYHSGS 421

[Close]

BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_ACECA (Maturase K OS=Acer campestre GN=matK PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 7.352e-51
Identity = 96/129 (74.42%), Postives = 111/129 (86.05%), Query Frame = -1

Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV LWQ HF   SQPGR+ +NHLY  K  I+FLGYLS  RLN+L+VRSQMLEN+FLIDN+MK+ +T VPII LIGSLT ARFCN+LGHPISK TW+D SDS++IDRF+RICRNLSHY+SGS
Sbjct:  293 LMNKWKYYLVNLWQWHFHVWSQPGRIHINHLY--KDYIDFLGYLSRGRLNTLVVRSQMLENAFLIDNAMKQFETTVPIIPLIGSLTTARFCNSLGHPISKPTWADSSDSYIIDRFMRICRNLSHYHSGS 419

[Close]

BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_ACEPM (Maturase K OS=Acer palmatum GN=matK PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 9.602e-51
Identity = 96/129 (74.42%), Postives = 110/129 (85.27%), Query Frame = -1

Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV LWQ HF   SQPGR+ +NHLY  K  INFLGYLS  RLN+L+VRSQMLEN+FLIDN+MK+ +T VPII LIGSLT ARFCN+LGHPISK TW+D SDS++IDRF+RICR LSHY+SGS
Sbjct:  295 LMNKWKYYLVNLWQWHFHVWSQPGRIHINHLY--KDYINFLGYLSRGRLNTLVVRSQMLENAFLIDNAMKQFETTVPIIPLIGSLTMARFCNSLGHPISKPTWADSSDSYIIDRFMRICRKLSHYHSGS 421

[Close]

BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_ACEPS (Maturase K OS=Acer pseudoplatanus GN=matK PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 1.638e-50
Identity = 96/129 (74.42%), Postives = 110/129 (85.27%), Query Frame = -1

Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYYLV LWQ HF   SQPGR+ +NHLY  K  I FLGYLS  RLN+L+VRSQMLEN+FLIDN+MK+ +T VPII LIGSLT ARFCN+LGHPISK TW+D SDS++IDRF+RICRNLSHY+SGS
Sbjct:  298 LMNKWKYYLVNLWQWHFHVWSQPGRIHINHLY--KDYIYFLGYLSRGRLNTLVVRSQMLENAFLIDNAMKQFETTVPIIPLIGSLTTARFCNSLGHPISKPTWADSSDSYIIDRFMRICRNLSHYHSGS 424

[Close]

BLAST of CB305000 vs. ExPASy Swiss-Prot
Match: MATK_ADADI (Maturase K OS=Adansonia digitata GN=matK PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 8.129e-50
Identity = 94/129 (72.87%), Postives = 109/129 (84.50%), Query Frame = -1

Query:   33 LMNKWKYYLVGLWQGHFPASSQPGRVQLNHLYLGKYAINFLGYLSGVRLNSLLVRSQMLENSFLIDNSMKKVDTAVPIIHLIGSLTKARFCNALGHPISKSTWSDFSDSHLIDRFVRICRNLSHYYSGS 419
            LMNKWKYY V LWQ HF   SQ GRV++N L   KY+++FLGYLS VRLN  +VRSQMLENSF+IDN+MKK+DT +PII LIGSL+KA+FCN LGHPISK TW+D SDS +IDRFVRICRNLSHY+SGS
Sbjct:  290 LMNKWKYYFVDLWQYHFYMWSQSGRVRINQL--SKYSLDFLGYLSSVRLNPSVVRSQMLENSFIIDNAMKKLDTRIPIISLIGSLSKAKFCNTLGHPISKPTWADSSDSDIIDRFVRICRNLSHYHSGS 416

The following BLAST results are available for this feature:

BLAST of CB305000 vs. ExPASy Swiss-Prot

BLAST of CB305000 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
MATK_CITSI	2.058e-69	97.67	Maturase K OS=Citrus sinensis GN=matK PE=3 SV=1	[more]
MATK_KOEPA	4.310e-51	75.97	Maturase K OS=Koelreuteria paniculata GN=matK PE=3...	[more]
MATK_AESPA	5.629e-51	76.74	Maturase K OS=Aesculus pavia GN=matK PE=3 SV=1	[more]
MATK_ACEPL	7.352e-51	74.42	Maturase K OS=Acer platanoides GN=matK PE=3 SV=1	[more]
MATK_ACEOP	7.352e-51	74.42	Maturase K OS=Acer opalus GN=matK PE=3 SV=1	[more]
MATK_ACEMO	7.352e-51	74.42	Maturase K OS=Acer monspessulanum GN=matK PE=3 SV=...	[more]
MATK_ACECA	7.352e-51	74.42	Maturase K OS=Acer campestre GN=matK PE=3 SV=1	[more]
MATK_ACEPM	9.602e-51	74.42	Maturase K OS=Acer palmatum GN=matK PE=3 SV=1	[more]
MATK_ACEPS	1.638e-50	74.42	Maturase K OS=Acer pseudoplatanus GN=matK PE=3 SV=...	[more]
MATK_ADADI	8.129e-50	72.87	Maturase K OS=Adansonia digitata GN=matK PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	FLAVEDO0003_IIaR_E01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IIaR_E01 3, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB305000 ID=CB305000; Name=CB305000; organism=Citrus sinensis; type=EST; length=419bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGATCCGCTGTAATAATG
AGAAAGATTTCTACATATACGCACAAATCGGTCGATAAGATGAGAATCAG
AGAAATCGGACCAAGTCGACTTACTGATAGGATGCCCTAATGCGTTACAA
AACCGCGCCTTAGTCAATGATCCAATCAGATGAATAATTGGAACGGCCGT
ATCGACCTTCTTCATAGAATTATCTATTAGAAATGAATTTTCTAGCATTT
GACTCCGTACCAACAAAGAATTTAGTCGCACACCGGAAAGATAGCCCAGA
AAGTTAATAGCGTACTTGCCTAAGTATAAGTGGTTTAGCTGAACCCTTCC
TGGTTGAGAAGACGCGGGAAAATGCCCTTGCCATAAACCGACAAGGTAAT
ATTTCCATTTATTCATCAA