CB305034

Overview
NameCB305034
Unique NameCB305034
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length419
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10213 contig Csv1_Contig10213:83..501. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305034 vs. ExPASy Swiss-Prot
Match: RLC1_CITLI ((R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 2.280e-60
Identity = 114/129 (88.37%), Postives = 118/129 (91.47%), Query Frame = -1
Query:   33 INPSTLATSVNGFKCLPLATNRAAIRIMAKNKPVQCLVSTKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVKTAIKDVTEPLDQLELIDNLQRLGLAYHFEPEIRNILRNIPN 419
            INPSTL TSVN FKCLPLATN+AAIRIMAK KPVQCL+S KYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDE YKRRAEEL+GKVK AIKDV EPLDQLELIDNLQRLGLA+ FE EIRNIL NI N
Sbjct:    5 INPSTLVTSVNAFKCLPLATNKAAIRIMAKYKPVQCLISAKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDEAYKRRAEELRGKVKIAIKDVIEPLDQLELIDNLQRLGLAHRFETEIRNILNNIYN 133          
BLAST of CB305034 vs. ExPASy Swiss-Prot
Match: MYRS_QUEIL (Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.204e-22
Identity = 55/113 (48.67%), Postives = 74/113 (65.49%), Query Frame = -1
Query:   33 LATNRAAIRIMAKNKPVQCLVSTKYDNLT-VDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVKTAIKDVTEPLDQLELIDNLQRLGLAYHFEPEIRNILRNIPN 368
            L T+R     +A+  PVQC+V+ K      + RRSANYQPSIW+HD+++SL   Y  ET  R+   LK +V+  +  V  PL+QLELI+ LQRLGL+YHFE EI+ IL  + N
Sbjct:   27 LVTSRTRNGYLAR--PVQCMVANKVSTSPDILRRSANYQPSIWNHDYIESLRIEYVGETCTRQINVLKEQVRMMLHKVVNPLEQLELIEILQRLGLSYHFEEEIKRILDGVYN 137          
BLAST of CB305034 vs. ExPASy Swiss-Prot
Match: TPS2_CANSA ((+)-alpha-pinene synthase, chloroplastic OS=Cannabis sativa PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.266e-18
Identity = 48/95 (50.53%), Postives = 61/95 (64.21%), Query Frame = -1
Query:   45 PVQCLV--STKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVKTAIKDVTEPLDQLELIDNLQRLGLAYHFEPEIRNILR 323
            P+QC +  S   D  T+ RRSANY P IW  DF+QSL   Y  E Y  R+ +LK +VK  +  +   L QLELID LQRLG++YHFE EI +IL+
Sbjct:   53 PIQCSLAKSPSSDTSTIVRRSANYDPPIWSFDFIQSLPCKYKGEPYTSRSNKLKEEVKKMLVGMENSLVQLELIDTLQRLGISYHFENEIISILK 147          
BLAST of CB305034 vs. ExPASy Swiss-Prot
Match: OCIS_ARATH ((E)-beta-ocimene synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS03 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.071e-17
Identity = 41/81 (50.62%), Postives = 53/81 (65.43%), Query Frame = -1
Query:   39 VDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVKTAIKDVTEPLDQLELIDNLQRLGLAYHFEPEIRNILRNI 281
            V RRSANYQPS+W H++L SL + Y  E    R   LK +V   + +    L+QLELID LQRLG++YHFE EI+  L N+
Sbjct:   24 VSRRSANYQPSLWQHEYLLSLGNTYVKEDNVERVTLLKQEVSKMLNETEGLLEQLELIDTLQRLGVSYHFEQEIKKTLTNV 104          
BLAST of CB305034 vs. ExPASy Swiss-Prot
Match: TPS1_CANSA ((-)-limonene synthase, chloroplastic OS=Cannabis sativa GN=TPS1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.679e-16
Identity = 50/129 (38.76%), Postives = 72/129 (55.81%), Query Frame = -1
Query:   45 PSTLATSVNGFKCLPLATNRAAIRIMAKNKPVQCLVSTKYDNLTV------DRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVKTAIKDVTEPLDQLELIDNLQRLGLAYHFEPEIRNILR 413
            P T  TS++  K  P   +++ ++  +++     +  T  DN +       DRRSANY P IW  DF+QSL   Y  E+Y  R  +L+  VK  +  V   L QLELID +QRLG++Y FE EI +IL+
Sbjct:   27 PKTSITSIS--KPKPKLKSKSNLKSRSRSSTCYSIQCTVVDNPSSTITNNSDRRSANYGPPIWSFDFVQSLPIQYKGESYTSRLNKLEKDVKRMLIGVENSLAQLELIDTIQRLGISYRFENEIISILK 153          
BLAST of CB305034 vs. ExPASy Swiss-Prot
Match: MYRS2_ARATH (Myrcene/ocimene synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS24 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.310e-15
Identity = 42/84 (50.00%), Postives = 56/84 (66.67%), Query Frame = -1
Query:   42 LTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVKTAIKDV--TEPLDQLELIDNLQRLGLAYHFEPEIRNILRN 287
            L + RRS NYQPS WDH +L S+ + Y +E        LK KVK  +++V     L++LELID+LQ+LG++YHFE EI NIL N
Sbjct:   43 LDLRRRSGNYQPSSWDHSYLLSIENKYVNEKEVITRHVLKKKVKKMLEEVETKSRLEKLELIDDLQKLGVSYHFEQEINNILTN 126          
BLAST of CB305034 vs. ExPASy Swiss-Prot
Match: MYRS1_ARATH (Myrcene/ocimene synthase 1, chloroplastic OS=Arabidopsis thaliana GN=TPS10 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.711e-15
Identity = 42/80 (52.50%), Postives = 54/80 (67.50%), Query Frame = -1
Query:   48 TVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVKTAIKDVTEP-LDQLELIDNLQRLGLAYHFEPEIRNIL 284
            TV RRSANYQPS WDH  L S+ + +  +   R  + LK KV+  + D  +  LDQLE ID+LQ+LG++YHFE EI NIL
Sbjct:   43 TVQRRSANYQPSRWDHHHLLSVENKFAKDKRVRERDLLKEKVRKMLNDEQKTYLDQLEFIDDLQKLGVSYHFEAEIDNIL 122          
BLAST of CB305034 vs. ExPASy Swiss-Prot
Match: SSS_SALOF ((+)-sabinene synthase, chloroplastic OS=Salvia officinalis PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.918e-15
Identity = 39/81 (48.15%), Postives = 57/81 (70.37%), Query Frame = -1
Query:   33 RRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVKTAIKDVTEPLDQLELIDNLQRLGLAYHFEPEIRNILRNIPN 275
            RRS +YQPS+WD +++QSLN+ Y ++ +  R  EL  +V+  +K   E + QLELID+LQ LGL+Y F+ EI+ IL +I N
Sbjct:   52 RRSGDYQPSLWDFNYIQSLNTPYKEQRHFNRQAELIMQVRMLLKVKMEAIQQLELIDDLQYLGLSYFFQDEIKQILSSIHN 132          
BLAST of CB305034 vs. ExPASy Swiss-Prot
Match: BPPS_SALOF ((+)-bornyl diphosphate synthase, chloroplastic OS=Salvia officinalis PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.977e-15
Identity = 48/130 (36.92%), Postives = 75/130 (57.69%), Query Frame = -1
Query:   33 INPSTLATSVNGFKCLPLATNRAA-IRIMAKNKPVQCLVSTKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVKTAIKDVTEPLDQLELIDNLQRLGLAYHFEPEIRNILRNIPN 419
            +N S L+  +N    L    ++A  +   A    ++   S+K       RRS NYQP++WD +++QSLN+ YT+E +  R  EL  +V+  +K+  EP+ QLELI +L+ LGL+  F+ EI+ IL  I N
Sbjct:    6 MNVSILSKPLNCLHNLERRPSKALLVPCTAPTARLRASCSSKLQEAHQIRRSGNYQPALWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKEKMEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYN 135          
BLAST of CB305034 vs. ExPASy Swiss-Prot
Match: CINS_ARATH (1,8-cineole synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS27 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.448e-14
Identity = 45/108 (41.67%), Postives = 64/108 (59.26%), Query Frame = -1
Query:   39 NRAAIRIMAKNKPVQCLVSTKYDNLTVDRRSANYQPSIWDHDFLQSLNSNYTDETYKRRAEELKGKVKTAIKDVTEP-LDQLELIDNLQRLGLAYHFEPEIRNILRNI 359
            +R   + M K  P   LV        + RRS NYQPS W+H +L S+ + Y  ET     + LK KVK+ + D  +  L+QLELID+LQ+LG++YHFE EI + L ++
Sbjct:   26 HRFVCKSMTKTTPDTTLVE-------LSRRSGNYQPSPWNHCYLLSIENKYASETEVITRDVLKKKVKSMLDDEKKSRLEQLELIDDLQKLGVSYHFEIEINDTLTDL 126          
The following BLAST results are available for this feature:
BLAST of CB305034 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RLC1_CITLI2.280e-6088.37(R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1[more]
MYRS_QUEIL4.204e-2248.67Myrcene synthase, chloroplastic OS=Quercus ilex PE... [more]
TPS2_CANSA1.266e-1850.53(+)-alpha-pinene synthase, chloroplastic OS=Cannab... [more]
OCIS_ARATH9.071e-1750.62(E)-beta-ocimene synthase, chloroplastic OS=Arabid... [more]
TPS1_CANSA7.679e-1638.76(-)-limonene synthase, chloroplastic OS=Cannabis s... [more]
MYRS2_ARATH1.310e-1550.00Myrcene/ocimene synthase 2, chloroplastic OS=Arabi... [more]
MYRS1_ARATH1.711e-1552.50Myrcene/ocimene synthase 1, chloroplastic OS=Arabi... [more]
SSS_SALOF2.918e-1548.15(+)-sabinene synthase, chloroplastic OS=Salvia off... [more]
BPPS_SALOF4.977e-1536.92(+)-bornyl diphosphate synthase, chloroplastic OS=... [more]
CINS_ARATH1.448e-1441.671,8-cineole synthase, chloroplastic OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_B06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_B06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305034 ID=CB305034; Name=CB305034; organism=Citrus sinensis; type=EST; length=419bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAGTTGGGGATATTACGCAA
TATGTTCCGAATCTCAGGCTCAAAATGATAAGCCAATCCAAGTCTTTGCA
AATTATCAATCAGCTCCAACTGATCCAGAGGCTCGGTTACATCCTTAATC
GCTGTCTTCACTTTTCCCTTCAGCTCTTCTGCTCGTCTTTTGTATGTTTC
ATCCGTATAGTTGCTATTCAGTGACTGCAAAAAATCATGGTCCCAAATTG
AAGGTTGGTAGTTTGCTGATCTCCTATCAACTGTCAAATTATCATATTTG
GTGCTGACAAGGCATTGGACTGGCTTATTTTTTGCCATGATTCTGATGGC
TGCTCTATTTGTTGCAAGAGGAAGACATTTGAAACCATTTACAGAGGTAG
CCAAGGTTGAGGGATTAAT
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