CB305044

Overview
NameCB305044
Unique NameCB305044
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length521
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB305044_ssr478 microsatellite CB305044_ssr478:478..493. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig409 contig Csv1_Contig409:5..527. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305044 vs. ExPASy Swiss-Prot
Match: QCR8_SOLTU (Cytochrome b-c1 complex subunit 8 OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.159e-30
Identity = 60/72 (83.33%), Postives = 67/72 (93.06%), Query Frame = -2
Query:  251 MGKQPVRMKAVVYALSPFQQKIMPGLWKDLTGKIHHKVSDNWISTILLLGPLVGTYAYVQNYQEKEKLAHRY 466
            MGKQPV++KAVVYA+SPFQQKIMPGLWKDL GKIHHKVS+NWIS  LLLGPLVGTY+YVQ++ EKEKL HRY
Sbjct:    1 MGKQPVKLKAVVYAISPFQQKIMPGLWKDLPGKIHHKVSENWISATLLLGPLVGTYSYVQHFLEKEKLEHRY 72          
The following BLAST results are available for this feature:
BLAST of CB305044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
QCR8_SOLTU1.159e-3083.33Cytochrome b-c1 complex subunit 8 OS=Solanum tuber... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_C10 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_C10 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305044 ID=CB305044; Name=CB305044; organism=Citrus sinensis; type=EST; length=521bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGACAATCCATGCATCAAATT
TATTTCATCAAAAGAAAGAGAAAATATTGCTCAGAATTTTGACAATAGTT
CTCAATCCATCAACAAAACCCACAAATCAAACTACTGTAGTCTCAACTAC
ATAGCAATTTCAATTATGTTTCACAACTTCAACAAGAGTTGTAGCTAATT
CACAAGAACCTTAAGCTTCTGAAAAAATAGAGGCACATCAGCTTGCTTCA
ATACCTGTGTGCCAACTTCTCCTTCTCCTGGTAATTTTGGACATACGCGT
AGGTGCCGACGAGAGGACCGAGCAAAAGGATAGTGCTGATCCAATTATCG
GAGACCTTGTGATGGATCTTACCGGTCAGATCCTTCCAAAGCCCCGGCAT
AATCTTTTGTTGAAATGGCGACAGTGCGTACACCACCGCCTTCATTCTCA
CCGGCTGCTTTCCCATGTCTTTTGATTTCTCTCTCTCTCTCTCGTTTCTT
AATTTCTCGCAATTTCTCCCC
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