CB305045

Overview
NameCB305045
Unique NameCB305045
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length504
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305045 vs. ExPASy Swiss-Prot
Match: Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 5.147e-33
Identity = 67/100 (67.00%), Postives = 80/100 (80.00%), Query Frame = -3
Query:  203 GMAKSVYTKYEPAANELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXAYCSEKYNQTVVSAAEKGYKVSSYLPLVPTERIAKVFSNGVVESQPL 502
            GMAKSVY+KYEPAA ELY+ YEPKAEQ AVSAW+KLNQ+PLF           A+CSEKYN TVV AAEKGY+V+SY+PLVPTERI+K+F+    E++PL
Sbjct:  141 GMAKSVYSKYEPAAKELYANYEPKAEQCAVSAWKKLNQLPLFPRLAQVAVPTAAFCSEKYNDTVVKAAEKGYRVTSYMPLVPTERISKIFAEEKAETEPL 240          
BLAST of CB305045 vs. ExPASy Swiss-Prot
Match: SRP_VITRI (Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.159e-25
Identity = 57/92 (61.96%), Postives = 67/92 (72.83%), Query Frame = -3
Query:  224 MAKSVYTKYEPAANELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXAYCSEKYNQTVVSAAEKGYKVSSYLPLVPTERIAKVFSNG 499
            + K+VY+K EP A EL SKYEP AEQYAVSAWR LN++PLF           AY SEKYNQ+V   AE+GY V+ YLPL+PTERIAKVF +G
Sbjct:  140 ITKNVYSKCEPTAKELCSKYEPVAEQYAVSAWRSLNRLPLFPQVAQVVVPTAAYWSEKYNQSVSYTAERGYTVALYLPLIPTERIAKVFQDG 231          
BLAST of CB305045 vs. ExPASy Swiss-Prot
Match: SRP_PHAVU (Stress-related protein OS=Phaseolus vulgaris GN=SRP PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 7.449e-24
Identity = 53/78 (67.95%), Postives = 62/78 (79.49%), Query Frame = -3
Query:  230 ANELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXAYCSEKYNQTVVSAAEKGYKVSSYLPLVPTERIAKVFS 463
            A  +YSKYEP AEQ AVSAWRKLNQ+PLF           AYC+EKYN+ +VS+AEKGY+VS+YLPLVPTE+IAKVFS
Sbjct:   88 AKTVYSKYEPTAEQCAVSAWRKLNQLPLFPQVANAVLPKAAYCTEKYNEVIVSSAEKGYRVSAYLPLVPTEKIAKVFS 165          
BLAST of CB305045 vs. ExPASy Swiss-Prot
Match: SRPP_HEVBR (Small rubber particle protein OS=Hevea brasiliensis GN=SRPP PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.361e-17
Identity = 46/92 (50.00%), Postives = 57/92 (61.96%), Query Frame = -3
Query:  227 MAKSVY-TKYEPAANELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXAYCSEKYNQTVVSAAEKGYKVSSYLPLVPTERIAKVFSN 499
            +A SV+ T  +  A  LY+  EPKAEQYAV  WR LN++PL             Y SEKYN  V    E+GY+VSSYLPL+PTE+I KVF +
Sbjct:  110 VASSVFNTGVQEGAKALYANLEPKAEQYAVITWRALNKLPLVPQVANVVVPTAVYFSEKYNDVVRGTTEQGYRVSSYLPLLPTEKITKVFGD 201          
BLAST of CB305045 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSJ (REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica GN=Os05g0151300 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.274e-15
Identity = 44/103 (42.72%), Postives = 60/103 (58.25%), Query Frame = -3
Query:  194 GMAKSVYTKYEPAANELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXAYCSEKYNQTVVSAAEKGYKVSSYLPLVPTERIAKVFSNGVVESQPLASA 502
            G+AKS   + EP A +LY++YEP AE+ A  AW  LN++PL            A  S +YN  V   A++G  V++YLPLVPTER+++VF        PLA A
Sbjct:  143 GLAKSAIARAEPRARDLYTRYEPVAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAKRGSAVATYLPLVPTERLSRVF------GYPLADA 239          
BLAST of CB305045 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSI (REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica GN=OsI_017815 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.274e-15
Identity = 44/103 (42.72%), Postives = 60/103 (58.25%), Query Frame = -3
Query:  194 GMAKSVYTKYEPAANELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXAYCSEKYNQTVVSAAEKGYKVSSYLPLVPTERIAKVFSNGVVESQPLASA 502
            G+AKS   + EP A +LY++YEP AE+ A  AW  LN++PL            A  S +YN  V   A++G  V++YLPLVPTER+++VF        PLA A
Sbjct:  143 GLAKSAIARAEPRARDLYTRYEPVAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAKRGSAVATYLPLVPTERLSRVF------GYPLADA 239          
BLAST of CB305045 vs. ExPASy Swiss-Prot
Match: Y2778_ARATH (REF/SRPP-like protein At2g47780 OS=Arabidopsis thaliana GN=At2g47780 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.445e-11
Identity = 31/76 (40.79%), Postives = 42/76 (55.26%), Query Frame = -3
Query:  236 ANELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXAYCSEKYNQTVVSAAEKGYKVSSYLPLVPTERIAKV 463
            A  +  KYEP AE YA + WR LNQ+PLF            Y SEKYN  V    ++ Y  + YLP++P E+I+ +
Sbjct:  151 ARSVRDKYEPAAEYYAATLWRLLNQLPLFPEVAHLVIPTAFYWSEKYNDAVRYVGDRDYFGAEYLPMIPIEKISDI 226          
The following BLAST results are available for this feature:
BLAST of CB305045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
Y3550_ARATH5.147e-3367.00REF/SRPP-like protein At3g05500 OS=Arabidopsis tha... [more]
SRP_VITRI5.159e-2561.96Stress-related protein OS=Vitis riparia GN=SRP PE=... [more]
SRP_PHAVU7.449e-2467.95Stress-related protein OS=Phaseolus vulgaris GN=SR... [more]
SRPP_HEVBR1.361e-1750.00Small rubber particle protein OS=Hevea brasiliensi... [more]
Y5513_ORYSJ1.274e-1542.72REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 ... [more]
Y5513_ORYSI1.274e-1542.72REF/SRPP-like protein OsI_017815 OS=Oryza sativa s... [more]
Y2778_ARATH9.445e-1140.79REF/SRPP-like protein At2g47780 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_C11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_C11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305045 ID=CB305045; Name=CB305045; organism=Citrus sinensis; type=EST; length=504bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAATGTCTTTAAAAATTAA
ATAATCGTAATCCACTCCATTTTCAACCCAATACACATATCCAGAAAGGG
AAACATTTACACTCCACAGCTTGCAAGAAAAATCACGAGGCCAGAAAACA
GAAAACACAGCTATCAATACACAGCAACATCAGCTTCATGTCCAGCAGAA
GCCAGAGGCTGCGATTCAACAACCCCGTTGCTGAACACCTTAGCAATCCT
CTCAGTAGGGACCAAAGGCAAATATGAGGAGACCTTGTACCCCTTCTCTG
CAGCGCTCACCACTGTTTGGTTGTATTTTTCAGAACAATAGGCAGCAGTT
GGCACAACAACTTGAGCTACTTGAGGGAATAGTGGCATCTGATTGAGCTT
GCGCCAAGCTGACACAGCATATTGCTCCGCTTTTGGTTCGTACTTAGAGT
AAAGTTCATTGGCTGCGGGCTCGTACTTGGTGTAAACGGATTTTGCCATT
CCTG
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