CB305049

Overview
NameCB305049
Unique NameCB305049
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2799 contig Csv1_Contig2799:236..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A2_NICPL (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.913e-49
Identity = 91/101 (90.10%), Postives = 98/101 (97.03%), Query Frame = -3 
Query:  280 HFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALKDIGPK 582
            HFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGN KDDLRLPTD+ LLTQ+KDGFAEGKDLV++VMS+MG+EQICALKDIGPK
Sbjct:   59 HFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

HSP 2 Score: 24.2534 bits (51), Expect = 3.913e-49
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = -1 
Query:  582 GKHGHAKC 605
            GKHGHAKC
Sbjct:   51 GKHGHAKC 58
[Close]
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A5_SOLTU (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.129e-48
Identity = 90/101 (89.11%), Postives = 97/101 (96.04%), Query Frame = -3 
Query:  280 HFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALKDIGPK 582
            HFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGN KDDLRLPTD+TLL Q+KDGFAEGKDLVL+VMS+MG+EQIC +KDIGPK
Sbjct:   59 HFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159

HSP 2 Score: 24.2534 bits (51), Expect = 1.129e-48
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = -1 
Query:  582 GKHGHAKC 605
            GKHGHAKC
Sbjct:   51 GKHGHAKC 58
[Close]
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLLC (Eukaryotic translation initiation factor 5A-1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.129e-48
Identity = 90/101 (89.11%), Postives = 97/101 (96.04%), Query Frame = -3 
Query:  280 HFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALKDIGPK 582
            HFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGN KDDLRLPTD+TLL Q+KDGFAEGKDLVL+VMS+MG+EQIC +KDIGPK
Sbjct:   59 HFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159

HSP 2 Score: 24.2534 bits (51), Expect = 1.129e-48
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = -1 
Query:  582 GKHGHAKC 605
            GKHGHAKC
Sbjct:   51 GKHGHAKC 58
[Close]
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A_MANES (Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 2.500e-48
Identity = 89/102 (87.25%), Postives = 99/102 (97.06%), Query Frame = -3 
Query:  277 HFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALKDIGPKS 582
            HFVGIDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTE GN KDDLRLPTDE LL+Q+KDGFAEGKDLV++VMS+MG+E+IC+LKDIGPK+
Sbjct:   59 HFVGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVSVMSAMGEERICSLKDIGPKN 160

HSP 2 Score: 24.2534 bits (51), Expect = 2.500e-48
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = -1 
Query:  582 GKHGHAKC 605
            GKHGHAKC
Sbjct:   51 GKHGHAKC 58
[Close]
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A_SENVE (Eukaryotic translation initiation factor 5A OS=Senecio vernalis GN=EIFSV1 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.501e-48
Identity = 89/101 (88.12%), Postives = 97/101 (96.04%), Query Frame = -3 
Query:  280 HFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALKDIGPK 582
            HFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGN KDDL+LPTD+ LLTQ+KDGF EGKDLV++VMS+MG+EQICALKDIGPK
Sbjct:   59 HFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLKLPTDDALLTQIKDGFGEGKDLVVSVMSAMGEEQICALKDIGPK 159

HSP 2 Score: 24.2534 bits (51), Expect = 2.501e-48
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = -1 
Query:  582 GKHGHAKC 605
            GKHGHAKC
Sbjct:   51 GKHGHAKC 58
[Close]
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A2_MEDSA (Eukaryotic translation initiation factor 5A-2 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.226e-47
Identity = 87/101 (86.14%), Postives = 99/101 (98.02%), Query Frame = -3 
Query:  280 HFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALKDIGPK 582
            HFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NG+ KDDL+LPTD++LLTQ+KDGFA+GKDLV++VMS+MG+EQICALKDIGPK
Sbjct:   59 HFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDDSLLTQIKDGFADGKDLVVSVMSAMGEEQICALKDIGPK 159

HSP 2 Score: 24.2534 bits (51), Expect = 1.226e-47
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = -1 
Query:  582 GKHGHAKC 605
            GKHGHAKC
Sbjct:   51 GKHGHAKC 58
[Close]
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A1_TOBAC (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.715e-47
Identity = 87/101 (86.14%), Postives = 95/101 (94.06%), Query Frame = -3 
Query:  280 HFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALKDIGPK 582
            HFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGN KDDLRLPTD+ LL  +KDGFAEGKDLVL+VMS+MG+EQIC +KD+GPK
Sbjct:   59 HFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159

HSP 2 Score: 24.2534 bits (51), Expect = 2.715e-47
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = -1 
Query:  582 GKHGHAKC 605
            GKHGHAKC
Sbjct:   51 GKHGHAKC 58
[Close]
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A1_NICPL (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.715e-47
Identity = 87/101 (86.14%), Postives = 95/101 (94.06%), Query Frame = -3 
Query:  280 HFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALKDIGPK 582
            HFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGN KDDLRLPTD+ LL  +KDGFAEGKDLVL+VMS+MG+EQIC +KD+GPK
Sbjct:   59 HFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159

HSP 2 Score: 24.2534 bits (51), Expect = 2.715e-47
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = -1 
Query:  582 GKHGHAKC 605
            GKHGHAKC
Sbjct:   51 GKHGHAKC 58
[Close]
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLTU (Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum GN=EIF5A4 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.611e-47
Identity = 88/101 (87.13%), Postives = 98/101 (97.03%), Query Frame = -3 
Query:  280 HFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALKDIGPK 582
            HFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGN KDDLRLPTD++LL+Q+KDGFAEGKDLV++VMS+MG+EQI ALKDIGPK
Sbjct:   59 HFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDSLLSQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159

HSP 2 Score: 24.2534 bits (51), Expect = 4.611e-47
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = -1 
Query:  582 GKHGHAKC 605
            GKHGHAKC
Sbjct:   51 GKHGHAKC 58
[Close]
BLAST of CB305049 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLTU (Eukaryotic translation initiation factor 5A-1/2 OS=Solanum tuberosum GN=EIF5A1 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.330e-46
Identity = 88/102 (86.27%), Postives = 95/102 (93.14%), Query Frame = -3 
Query:  277 HFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNPKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGKEQICALKDIGPKS 582
            HFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGN KDDLRLPTD+ LL Q+K GF EGKDLVL+VMS+MG+EQICA+KDIG KS
Sbjct:   59 HFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDALLNQVKGGFEEGKDLVLSVMSAMGEEQICAVKDIGTKS 160

HSP 2 Score: 24.2534 bits (51), Expect = 1.330e-46
Identity = 8/8 (100.00%), Postives = 8/8 (100.00%), Query Frame = -1 
Query:  582 GKHGHAKC 605
            GKHGHAKC
Sbjct:   51 GKHGHAKC 58
The following BLAST results are available for this feature:
BLAST of CB305049 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
IF5A2_NICPL3.913e-4990.10Eukaryotic translation initiation factor 5A-2 OS=N... [more]
IF5A5_SOLTU1.129e-4889.11Eukaryotic translation initiation factor 5A-5 OS=S... [more]
IF5A1_SOLLC1.129e-4889.11Eukaryotic translation initiation factor 5A-1 OS=S... [more]
IF5A_MANES2.500e-4887.25Eukaryotic translation initiation factor 5A OS=Man... [more]
IF5A_SENVE2.501e-4888.12Eukaryotic translation initiation factor 5A OS=Sen... [more]
IF5A2_MEDSA1.226e-4786.14Eukaryotic translation initiation factor 5A-2 OS=M... [more]
IF5A1_TOBAC2.715e-4786.14Eukaryotic translation initiation factor 5A-1 OS=N... [more]
IF5A1_NICPL2.715e-4786.14Eukaryotic translation initiation factor 5A-1 OS=N... [more]
IF5A4_SOLTU4.611e-4787.13Eukaryotic translation initiation factor 5A-4 OS=S... [more]
IF5A1_SOLTU1.330e-4686.27Eukaryotic translation initiation factor 5A-1/2 OS... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_D03 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_D03 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305049 ID=CB305049; Name=CB305049; organism=Citrus sinensis; type=EST; length=605bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTCAATAACACCCCAATCATATAT
AAATAACAAAGACGATTTCTTTCTAACATTATAATTCATTAGAGAAATTG
AACACCATAAATTTTTTAGCCGCCAATCAAAAGAACTACATATTCCAGGC
AGCTTGCAATTCTCACCACAAAACAAAGACGCTACAAATATTAAAGGCAA
ACTCTAGATGATTAAAATATTTTTCCAAAAAACAGATGCAACCAGACACA
GAAGATAATCACATATCGCGCAACTACGACTTTGGGCCAATATCCTTGAG
GGCACAGATCTGCTCCTTGCCCATTGAAGACATGACAGTCAAAACCAAGT
CCTTCCCCTCAGCAAAACCGTCCTTGAGCTGGGTCAGCAGAGTCTCATCG
GTTGGGAGCCTCAGATCATCCTTGGGGTTCCCATTTTCAGTCAGCAAACT
CACAAATCCATCCTCAGAAATATCAATCAACTGATAGTCGGTACGGTTGA
CATGGGGAACATCACAGTTATGAGAAGAGGGGACAATATCTTCCAGCTTC
TTTCCACTGAAGATATCAATTCCAACAAAGTGCACTTAGCATGACCGTGC
TTTCC
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