CB305052

Overview
NameCB305052
Unique NameCB305052
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2549 contig Csv1_Contig2549:594..1148. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER3_ARATH (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.759e-46
Identity = 86/122 (70.49%), Postives = 105/122 (86.07%), Query Frame = -1
Query:  184 SLGSVKGISKTFGLKCSPNFQASM--AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 543
            S+GS K +S++FGLKCS N   +   AVYK+KL+GP G+E EFE Q+DQYILDAAEEAGVDLPYSCRAGACSTCAG++VSG+VDQSDGSFL+D+ +E GY+LTC++YP SDCVI +HKE EL
Sbjct:   33 SVGSTKRVSRSFGLKCSANSGGATMSAVYKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETEL 154          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER3_MAIZE (Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.646e-44
Identity = 86/125 (68.80%), Postives = 100/125 (80.00%), Query Frame = -1
Query:  184 KSPTSLGSVKGISKTFGLKCSPNFQAS-MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 555
            KSP+SL     ++K   LK S     S MAVYK+KL+GP+GEEHEF+A +D YILDAAE AGV+LPYSCRAGACSTCAGK+ SGSVDQSDGSFLDD Q E GY+LTC+SYP SDCVI +HKE +L
Sbjct:   27 KSPSSLSFFSQVTKVPSLKTSKKLDVSAMAVYKVKLVGPEGEEHEFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFLDDGQQEEGYVLTCVSYPKSDCVIHTHKEGDL 151          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER2_RAPSA (Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.595e-39
Identity = 72/96 (75.00%), Postives = 87/96 (90.62%), Query Frame = -1
Query:  184 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 471
            AVYK+KLIGP+GEE+EFE Q+DQ+ILDAAEEAGVDLPYSCRAGACSTCAG++V G VDQS+GSFL+D+  E G++LTC++YP SDCVI +HKE EL
Sbjct:    2 AVYKVKLIGPEGEENEFEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQSEGSFLEDDHFEKGFVLTCVAYPQSDCVIHTHKETEL 97          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER1_RAPSA (Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.350e-38
Identity = 72/96 (75.00%), Postives = 84/96 (87.50%), Query Frame = -1
Query:  184 AVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 471
            AVYK+KLIGP G+E+EF+  +DQYILDAAEEAGVDLPYSCRAGACSTCAGK+  G VDQSDGSFL+D+  E GY+LTC++YP SD VI +HKEEEL
Sbjct:    2 AVYKVKLIGPDGQENEFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQSDGSFLEDHHFEKGYVLTCVAYPQSDLVIHTHKEEEL 97          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER6_MAIZE (Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.007e-38
Identity = 74/120 (61.67%), Postives = 94/120 (78.33%), Query Frame = -1
Query:  184 GSVKGISKTFGLKCSPNFQASMA--VYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 537
            G  +  ++  G + S  F AS A  ++K+KL+GP G EHEFEA +D YIL+AAE AGV+LP+SCRAG+CSTCAG++ +G VDQS+GSFLDD QM  GYLLTCISYP +DCVI +HKEE+L
Sbjct:   35 GHARQAARASGPRLSSRFVASAAAVLHKVKLVGPDGTEHEFEAPDDTYILEAAETAGVELPFSCRAGSCSTCAGRMSAGEVDQSEGSFLDDGQMAEGYLLTCISYPKADCVIHTHKEEDL 154          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_MASLA (Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 5.671e-37
Identity = 72/98 (73.47%), Postives = 85/98 (86.73%), Query Frame = -1
Query:  184 MAVYKIKLIGP-KGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 474
            MA YK+ LI   +G     E  +DQYILDAAEEAG+DLPYSCRAGACSTCAGKL+SG+VDQSD SFLDD+Q+EAGY+LTC++YPTSDCVI++HKEEEL
Sbjct:    1 MATYKVTLINEAEGLNKTIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEEEL 98          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER1_ARATH (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.650e-36
Identity = 77/129 (59.69%), Postives = 97/129 (75.19%), Query Frame = -1
Query:  184 KSPTSLGSVK--GISKTFGLKCSP---NFQASMAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 555
            ++P SL S+        FGLK S        +MA YK+K I P+GE+ E E +ED Y+LDAAEEAG+DLPYSCRAG+CS+CAGK+VSGS+DQSD SFLDD QM  GY+LTC++YPTSD VI++HKEE +
Sbjct:   20 QTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKFITPEGEQ-EVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETHKEEAI 147          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER1_PEA (Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PETF PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.155e-36
Identity = 76/126 (60.32%), Postives = 95/126 (75.40%), Query Frame = -1
Query:  184 PTSLGSVKGISKTF-GLKCS---PNFQASMAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 549
            P S+ + K  S  F GLK S    +   +MA YK+KL+ P G + EFE   D YILD AEE G+DLPYSCRAG+CS+CAGK+V G VDQSDGSFLDD Q+EAG++LTC++YPTSD VI++HKEE+L
Sbjct:   23 PMSVTTTKAFSNGFLGLKTSLKRGDLAVAMASYKVKLVTPDGTQ-EFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQIEAGFVLTCVAYPTSDVVIETHKEEDL 147          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_SYNY4 (Ferredoxin OS=Synechocystis sp. (strain PCC 6714) PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 2.815e-36
Identity = 70/97 (72.16%), Postives = 84/97 (86.60%), Query Frame = -1
Query:  184 MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 474
            MA Y +KLI P GE +  E  +D YILDAAEEAG+DLPYSCRAGACSTCAGK+ +GSVDQSD SFLDD+Q+EAGY+LTC++YPTSDC I++HKEE+L
Sbjct:    1 MASYTVKLITPDGE-NSIECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96          
BLAST of CB305052 vs. ExPASy Swiss-Prot
Match: FER_SYNY3 (Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803) GN=petF PE=1 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 3.676e-36
Identity = 70/97 (72.16%), Postives = 83/97 (85.57%), Query Frame = -1
Query:  184 MAVYKIKLIGPKGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 474
            MA Y +KLI P GE    E  +D YILDAAEEAG+DLPYSCRAGACSTCAGK+ +GSVDQSD SFLDD+Q+EAGY+LTC++YPTSDC I++HKEE+L
Sbjct:    1 MASYTVKLITPDGES-SIECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96          
The following BLAST results are available for this feature:
BLAST of CB305052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER3_ARATH1.759e-4670.49Ferredoxin-3, chloroplastic OS=Arabidopsis thalian... [more]
FER3_MAIZE1.646e-4468.80Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE... [more]
FER2_RAPSA1.595e-3975.00Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=... [more]
FER1_RAPSA1.350e-3875.00Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=... [more]
FER6_MAIZE3.007e-3861.67Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE... [more]
FER_MASLA5.671e-3773.47Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1... [more]
FER1_ARATH1.650e-3659.69Ferredoxin-1, chloroplastic OS=Arabidopsis thalian... [more]
FER1_PEA2.155e-3660.32Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PE... [more]
FER_SYNY42.815e-3672.16Ferredoxin OS=Synechocystis sp. (strain PCC 6714) ... [more]
FER_SYNY33.676e-3672.16Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_D07 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_D07 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305052 ID=CB305052; Name=CB305052; organism=Citrus sinensis; type=EST; length=555bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTATGAAAAATTACAGATTCC
ATTGCACCAGACAACACGCTGAAATCTAAAAAATATTGTAGGCCCATGAG
AAACCTTATCAGCATACTCAGGCACTTGATCACAGTTCATACTTGAAAAA
CCCTAAACCAACTGACAGCAAAGGCACTCAGCAAAGCTCTTCTTCCTTGT
GAGACTGAATCACGCAATCTGAAGTCGGGTATGAAATGCAAGTCAGCAGA
TAACCAGCCTCCATTTGATTGTCATCGAGGAAGGAACCATCTGACTGGTC
AACTGAACCAGACACCAACTTCCCAGCACACGTCGAGCAAGCACCAGCGC
GGCAGGAATAGGGCAGGTCGACTCCTGCTTCCTCAGCTGCATCGAGGATG
TACTGGTCTTCCTGGGCCTCAAACTCATGCTCTTCACCCTTAGGTCCAAT
CAGCTTAATCTTGTAGACAGCCATTGATGCTTGGAAATTGGGAGAGCATT
TCAGGCCAAAGGTCTTGGAGATGCCCTTAACAGATCCAAGTGAGGTTGGG
CTCTT
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