CB305073

Overview
NameCB305073
Unique NameCB305073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB305073_ssr178 microsatellite CB305073_ssr178:178..193. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13803 contig Csv1_Contig13803:28..654. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.422e-32
Identity = 60/97 (61.86%), Postives = 78/97 (80.41%), Query Frame = -3
Query:  246 PVTNAITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 536
            P+  AITCGQV+++LAPCIPY+R GG  PP  CC+G+R++N  ARTTPDRQAACNCLK+   ++ G+ PN AA LP +CGV IPY+ISPST+C+ V+
Sbjct:   22 PIAQAITCGQVSSNLAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.163e-32
Identity = 64/97 (65.98%), Postives = 75/97 (77.32%), Query Frame = -3
Query:  246 PVTNAITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 536
            P T A++CGQV++SLAPCI YL  GG  PP  CCSGV+SLN AA+TTPDRQAAC CLK AY +I G+    AA  P +CGV IPYKISPSTDCS+V+
Sbjct:   21 PYTEALSCGQVSSSLAPCISYLTKGGAVPPA-CCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.131e-32
Identity = 62/96 (64.58%), Postives = 77/96 (80.21%), Query Frame = -3
Query:  246 VTNAITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 533
            V +AITCGQVT+SLAPCI Y+R+GG  PP  CC+G+R++NG ARTT DRQ ACNCLK   G+I G+ PN AAGLP +CGV +PYKIS ST+C+ V+
Sbjct:   21 VAHAITCGQVTSSLAPCIGYVRSGGAVPPA-CCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.570e-31
Identity = 63/92 (68.48%), Postives = 75/92 (81.52%), Query Frame = -3
Query:  246 ITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 521
            ITCGQV++SLAPCI YLR GG   P  CC+GVRSLN AA+TT DRQAACNCLK A+ +I+G+  N+AAGLP +CGV +PYKISPSTDC  V+
Sbjct:    1 ITCGQVSSSLAPCINYLRAGG-VVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.866e-30
Identity = 58/92 (63.04%), Postives = 74/92 (80.43%), Query Frame = -3
Query:  246 ITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 521
            ITCGQV+++LAPCIPY+R GG  PP  CC+G+R++N  ARTTPDRQAACNCLK+   ++ G+ PN AA LP +CGV IPYKIS ST+C+ V+
Sbjct:    1 ITCGQVSSALAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.469e-29
Identity = 56/96 (58.33%), Postives = 75/96 (78.12%), Query Frame = -3
Query:  246 VTNAITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 533
            V +AITC QV+A+LAPCI Y+R+GG  PP  CC+G++++NG A+TTPDRQAACNCLK   G++ G+ P  A  LP +CGV +PYKIS ST+C+ V+
Sbjct:   21 VAHAITCSQVSANLAPCINYVRSGGAVPPA-CCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 1.919e-29
Identity = 58/92 (63.04%), Postives = 73/92 (79.35%), Query Frame = -3
Query:  246 ITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 521
            ITCGQV++SLAPCI Y+R GG  PP  CC+G+R++N  ARTTPDR+ ACNCLK+  G+I G+ PN AA LP +CGV IPYKIS ST+C+ V+
Sbjct:    1 ITCGQVSSSLAPCIGYVRGGGAVPPA-CCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.291e-29
Identity = 54/97 (55.67%), Postives = 74/97 (76.29%), Query Frame = -3
Query:  246 PVTNAITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 536
            P+  A+TCGQV+++LAPCI Y+R GG  PP  CC+G+R++N  A+TT DRQ ACNCLK+   ++ G+  N AA LP +CGV +PYKISPST+C+ V+
Sbjct:   22 PIAQALTCGQVSSNLAPCIAYVRGGGAVPPA-CCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.121e-28
Identity = 62/97 (63.92%), Postives = 70/97 (72.16%), Query Frame = -3
Query:  246 PVTNAITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 536
            P   AITCGQVT++LAPC+ YLR  G  P   CC GV++L  +ARTT DRQ AC CLK A G I GI    AAGLPS CGV IPYKISPSTDCS+V+
Sbjct:   20 PCAEAITCGQVTSNLAPCLAYLRNTG--PLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
BLAST of CB305073 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.726e-28
Identity = 55/92 (59.78%), Postives = 73/92 (79.35%), Query Frame = -3
Query:  246 ITCGQVTASLAPCIPYLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 521
            ITCGQV+++LAPCI Y++ GG  PP  CC+G+R++N  ARTT DR+AACNCLK+  G+I G+ PN AA LP +CGV +PYKIS ST+C+ V+
Sbjct:    1 ITCGQVSSNLAPCINYVKGGGAVPPA-CCNGIRNVNNLARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91          
The following BLAST results are available for this feature:
BLAST of CB305073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
NLTP1_PRUDU2.422e-3261.86Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_HELAN3.163e-3265.98Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP_MALDO4.131e-3264.58Non-specific lipid-transfer protein OS=Malus domes... [more]
LTP1_MORNI1.570e-3168.48Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP1_PRUPE3.866e-3063.04Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP_PYRCO1.469e-2958.33Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP1_PRUAR1.919e-2963.04Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP_PRUAV7.291e-2955.67Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP1_TOBAC2.121e-2863.92Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP1_PRUDO4.726e-2859.78Non-specific lipid-transfer protein 1 OS=Prunus do... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_F12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_F12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305073 ID=CB305073; Name=CB305073; organism=Citrus sinensis; type=EST; length=631bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTACCACAAAATAACTATAATTAA
TCACTCAAAACACAGATCGCGTTTACATATTTAATATGACATAAAAAGCA
AATATACAAACATGACATGAGAGTGAAACTCATACAAGTGGAGACTCGTT
CGGACAAAGAAATTAACATAGATATTCTTTATTTATTTATTTATTCTTCT
CAGTCAATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTCCACCTGA
CCCTAGAGCAGTCGGTGCTGGGGCTGATCTTGTAAGGAATTCTGACTCCA
CATTGACTAGGAAGGCCAGCGGCAACATTAGGTTTGATGCCGCGGATTGT
TCCGTAAGCTCGTTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGGGGTGG
TTCTGGCGGCGCCGTTGAGAGACCTGACGCCGCTACAGCATGGCGGTGGA
GGAAAACGCCCTCCAGTTCTCAAGTAAGGGATGCATGGAGCCAAGGAGGC
TGTCACCTGCCCGCATGTTATGGCATTAGTCACCGGGGCAGTCACCAGAA
TGCACAAAAGCAAAGCACAAACAAGCTTAAGAGCAGCCATGAGGATTCTT
CAGGGAGGCTTTTGCTTGGTTATAGCTAGNN
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