CB305078

Overview
NameCB305078
Unique NameCB305078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1234 contig Csv1_Contig1234:1149..1740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK1_SOLTU (S-adenosylmethionine synthetase 1 OS=Solanum tuberosum GN=METK1 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 8.060e-48
Identity = 88/91 (96.70%), Postives = 91/91 (100.00%), Query Frame = -3
Query:  318 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 590
            CIVQVSYAIGVPEPLSVFVD+YGTGKIPDKEILKIVKE+FDFRPGMM+INLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ
Sbjct:  302 CIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKENFDFRPGMMSINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 392          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK_MEDTR (S-adenosylmethionine synthetase OS=Medicago truncatula GN=METK PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.000e-47
Identity = 87/92 (94.57%), Postives = 91/92 (98.91%), Query Frame = -3
Query:  315 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 590
            CIVQVSYAIGVPEPLSVFVDSYGTGKIPD+EIL+IVKE+FDFRPGM+TINLDLKRGGN RFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA
Sbjct:  303 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDREILQIVKENFDFRPGMITINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 394          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK2_ELAUM (S-adenosylmethionine synthetase 2 OS=Elaeagnus umbellata GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 5.224e-47
Identity = 86/92 (93.48%), Postives = 91/92 (98.91%), Query Frame = -3
Query:  315 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 590
            CIVQVSYAIGVP+PLSVFVDSYGTGKIPDKEILKIVKE+FDFRPGM+TINLDLKRGGN RFLKTAAYGHFGRDDPDFTWE+VKPLKWEKPQ+
Sbjct:  302 CIVQVSYAIGVPDPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMITINLDLKRGGNDRFLKTAAYGHFGRDDPDFTWEIVKPLKWEKPQS 393          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK_BRARP (S-adenosylmethionine synthetase OS=Brassica rapa subsp. pekinensis GN=SAMS PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.164e-46
Identity = 87/91 (95.60%), Postives = 90/91 (98.90%), Query Frame = -3
Query:  315 IVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 587
            +VQVSYAIGVPEPLSVFVD+YGTG IPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW+KPQA
Sbjct:  303 LVQVSYAIGVPEPLSVFVDTYGTGLIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 393          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK5_BRAJU (S-adenosylmethionine synthetase 5 OS=Brassica juncea GN=MSAMS5 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.164e-46
Identity = 87/91 (95.60%), Postives = 90/91 (98.90%), Query Frame = -3
Query:  315 IVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 587
            +VQVSYAIGVPEPLSVFVD+YGTG IPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW+KPQA
Sbjct:  303 LVQVSYAIGVPEPLSVFVDTYGTGLIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 393          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK3_BRAJU (S-adenosylmethionine synthetase 3 OS=Brassica juncea GN=MSAMS3 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.164e-46
Identity = 87/91 (95.60%), Postives = 90/91 (98.90%), Query Frame = -3
Query:  315 IVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 587
            +VQVSYAIGVPEPLSVFVD+YGTG IPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW+KPQA
Sbjct:  303 LVQVSYAIGVPEPLSVFVDTYGTGLIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 393          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK1_POPTR (S-adenosylmethionine synthetase 1 OS=Populus trichocarpa GN=METK1 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.164e-46
Identity = 89/92 (96.74%), Postives = 91/92 (98.91%), Query Frame = -3
Query:  315 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 590
            CIVQVSYAIGVPEPLSVFVD+YGTGKIPDKEILKIVKE+FDFRPGMMTINLDLKRGGN RFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA
Sbjct:  302 CIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKENFDFRPGMMTINLDLKRGGN-RFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 392          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK2_VITVI (S-adenosylmethionine synthetase 2 OS=Vitis vinifera GN=METK2 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.520e-46
Identity = 86/92 (93.48%), Postives = 91/92 (98.91%), Query Frame = -3
Query:  315 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 590
            CIVQVSYAIGVPEPLSVFVD+YGTGKIPD+EILKIVKE+FDFRPGM++INLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK QA
Sbjct:  302 CIVQVSYAIGVPEPLSVFVDTYGTGKIPDREILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKTQA 393          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK1_SOLLC (S-adenosylmethionine synthetase 1 OS=Solanum lycopersicum GN=SAM1 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.520e-46
Identity = 86/91 (94.51%), Postives = 90/91 (98.90%), Query Frame = -3
Query:  318 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 590
            CIVQVSYAIGVPEPLSVFVD+YGTGKIPD+EILKIVKE+FDFRPGMM+INLDLKRGGN RFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ
Sbjct:  302 CIVQVSYAIGVPEPLSVFVDTYGTGKIPDREILKIVKENFDFRPGMMSINLDLKRGGNRRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 392          
BLAST of CB305078 vs. ExPASy Swiss-Prot
Match: METK1_ELAUM (S-adenosylmethionine synthetase 1 OS=Elaeagnus umbellata GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.985e-46
Identity = 84/92 (91.30%), Postives = 90/92 (97.83%), Query Frame = -3
Query:  315 CIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 590
            C+VQVSYAIGVPEPLSVFVDSYGTG+IPDKEIL IVKE+FDFRPGM+TINLDLKRGGNGRFLKTA YGHFGRDDPDFTWE+VKPLKWEKPQ+
Sbjct:  302 CLVQVSYAIGVPEPLSVFVDSYGTGQIPDKEILNIVKENFDFRPGMITINLDLKRGGNGRFLKTAGYGHFGRDDPDFTWEIVKPLKWEKPQS 393          
The following BLAST results are available for this feature:
BLAST of CB305078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK1_SOLTU8.060e-4896.70S-adenosylmethionine synthetase 1 OS=Solanum tuber... [more]
METK_MEDTR4.000e-4794.57S-adenosylmethionine synthetase OS=Medicago trunca... [more]
METK2_ELAUM5.224e-4793.48S-adenosylmethionine synthetase 2 OS=Elaeagnus umb... [more]
METK_BRARP1.164e-4695.60S-adenosylmethionine synthetase OS=Brassica rapa s... [more]
METK5_BRAJU1.164e-4695.60S-adenosylmethionine synthetase 5 OS=Brassica junc... [more]
METK3_BRAJU1.164e-4695.60S-adenosylmethionine synthetase 3 OS=Brassica junc... [more]
METK1_POPTR1.164e-4696.74S-adenosylmethionine synthetase 1 OS=Populus trich... [more]
METK2_VITVI1.520e-4693.48S-adenosylmethionine synthetase 2 OS=Vitis vinifer... [more]
METK1_SOLLC1.520e-4694.51S-adenosylmethionine synthetase 1 OS=Solanum lycop... [more]
METK1_ELAUM1.985e-4691.30S-adenosylmethionine synthetase 1 OS=Elaeagnus umb... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_G05 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_G05 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305078 ID=CB305078; Name=CB305078; organism=Citrus sinensis; type=EST; length=592bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAAAGGAAGAATTTTACT
AATTCCAGGCACCAGTTGAGCAAAATTCTCAATCGATATCACTACACAAC
AGTGGGGACATGGTACATTAAACCAAAGCCAAAAGAGAAGGGGGGAAAGA
AGAAAAAGAAAGGAATTGAATGGGGAACATGTATGAGTTCTGAACACAGG
AGATTTGCTTAGTATTACAAAGCAGCAGCAAGATAATATTCAAATTATTC
ATCCACTACCAATAGAAGCAAACTTGAACAGCAGGGATAGTTTTCACTTT
TCAACTCAAATTTAAGCTTGAGGCTTTTCCCACTTGAGGGGCTTCACAAC
TTCCCAAGTGAAGTCTGGGTCATCCCTGCCAAAGTGTCCATAGGCAGCAG
TCTTCAAGAACCTGCCATTACCGCCCCTTTTGAGATCCAAATTGATGGTC
ATCATTCCTGGCCTGAAATCAAAGCTTTCCTTCACAATTTTGAGGATCTC
CTTGTCAGGAATCTTGCCGGTTCCATATGAGTCCACAAAAACAGACAATG
GCTCAGGCACACCAATGGCATAGGAGACTTGGACAATGCACC
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