CB305082

Overview
NameCB305082
Unique NameCB305082
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3889 contig Csv1_Contig3889:286..938. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305082 vs. ExPASy Swiss-Prot
Match: HBPL1_ARATH (Heme-binding-like protein At3g10130, chloroplastic OS=Arabidopsis thaliana GN=At3g10130 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.544e-16
Identity = 58/154 (37.66%), Postives = 85/154 (55.19%), Query Frame = -3
Query:  157 FSVLANYIGALGNPQNTKPEKIAMTAPVIT-KSSPEEEKIAMTAPVVT-KSDEKKMVTMQFVLPEKYQKAEEAPKPVNERVVIREEGERKYGVVKFGGVASDEVVGEKVDKLKKSLEKDGYKVVGQ---FLLARYNPPWTLPPFRTNEVMIPVE 603
            F+VLA Y+      +NT  EK+ MT PV+T K     EK+ MT PV+T K+ ++    M FV+P KY      P P +  V I++   +   VV F G  +DE +  +  +L+++L+ D    V     F +A+YNPP+TLP  R NEV + VE
Sbjct:  158 FNVLAEYLFG----KNTIKEKMEMTTPVVTRKVQSVGEKMEMTTPVITSKAKDQNQWRMSFVMPSKY--GSNLPLPKDPSVKIQQVPRKIVAVVAFSGYVTDEEIERRERELRRALQNDKKFRVRDGVSFEVAQYNPPFTLPFMRRNEVSLEVE 305          
The following BLAST results are available for this feature:
BLAST of CB305082 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
HBPL1_ARATH1.544e-1637.66Heme-binding-like protein At3g10130, chloroplastic... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_G12 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_G12 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305082 ID=CB305082; Name=CB305082; organism=Citrus sinensis; type=EST; length=653bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAACTTGCATTATTTACTT
AATTGCATATATTATCTAAGAACAAGCATCATCGGCATTACACAGAATCC
TATGATTGCATAAACTGCGAAAAGAAAAATCAAACTACAAACAGAGAAAC
CAGTCACTCAACTGGAATCATAACCTCATTAGTCCTGAAAGGCGGCAAAG
TCCAAGGGGGGTTATACCTAGCCAGTAAAAACTGCCCAACAACTTTATAC
CCATCTTTCTCCAAGCTTTTCTTCAGCTTATCAACTTTCTCACCCACCAC
TTCATCTGATGCAACTCCTCCAAATTTCACCACCCCATATTTCCTCTCCC
CCTCTTCTCTTATCACCACCCTCTCATTCACTGGCTTCGGTGCCTCCTCC
GCCTTCTGATACTTCTCCGGCAACACAAACTGCATTGTCACCATCTTCTT
CTCATCACTCTTTGTCACCACTGGAGCCGTCATGGCAATCTTCTCCTCTT
CAGGCGAGGACTTTGTTATCACCGGAGCTGTCATGGCAATCTTTTCAGGC
TTGGTGTTCTGCGGATTGCCTAATGCACCGATGTAATTTGCCAACACCGA
AAAGCCTCCATCCTTGTTACCCTTGAATGTTGACGGGTCATACGTGACTT
CTG
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