CB305083

Overview
NameCB305083
Unique NameCB305083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length559
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2369 contig Csv1_Contig2369:166..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305083 vs. ExPASy Swiss-Prot
Match: RLA1_MAIZE (60S acidic ribosomal protein P1 OS=Zea mays GN=RPP1A PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.006e-17
Identity = 41/56 (73.21%), Postives = 50/56 (89.29%), Query Frame = -3
Query:  390 LACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMN 557
            LAC YA LIL DDGIAIT +KIA +VKAAN+ +ESYWP+LFAKLLEKRN++DLI++
Sbjct:    6 LACRYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRNVEDLILS 61          
BLAST of CB305083 vs. ExPASy Swiss-Prot
Match: RLA11_ARATH (60S acidic ribosomal protein P1-1 OS=Arabidopsis thaliana GN=RPP1A PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.716e-17
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = -3
Query:  390 LACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMN 557
            LAC+YA +IL D+GIAIT DKIA LVKAA VSIESYWP LFAK+ EKRN+ DLIMN
Sbjct:    7 LACSYAVMILEDEGIAITADKIATLVKAAGVSIESYWPMLFAKMAEKRNVTDLIMN 62          
BLAST of CB305083 vs. ExPASy Swiss-Prot
Match: RLA13_ARATH (60S acidic ribosomal protein P1-3 OS=Arabidopsis thaliana GN=RPP1C PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 3.822e-17
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = -3
Query:  390 LACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMN 557
            LAC+YA +IL D+GIAIT DKIA LVKAA V+IESYWP LFAK+ EKRN+ DLIMN
Sbjct:    7 LACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMN 62          
BLAST of CB305083 vs. ExPASy Swiss-Prot
Match: RLA12_ARATH (60S acidic ribosomal protein P1-2 OS=Arabidopsis thaliana GN=RPP1B PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 3.822e-17
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = -3
Query:  390 LACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMN 557
            LAC+YA +IL D+GIAIT+DKIA LVKAA V IESYWP LFAK+ EKRN+ DLIMN
Sbjct:    7 LACSYAVMILEDEGIAITSDKIATLVKAAGVEIESYWPMLFAKMAEKRNVTDLIMN 62          
BLAST of CB305083 vs. ExPASy Swiss-Prot
Match: RLA1_CHLRE (60S acidic ribosomal protein P1 OS=Chlamydomonas reinhardtii PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.102e-15
Identity = 36/56 (64.29%), Postives = 43/56 (76.79%), Query Frame = -3
Query:  390 LACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMN 557
            LACTYA LILHDDG+ IT D I  + KAA V +E YWP+LFAKL  K+++DDLI N
Sbjct:    6 LACTYAALILHDDGLEITADNINTICKAAGVEVEGYWPALFAKLFAKKSMDDLITN 61          
BLAST of CB305083 vs. ExPASy Swiss-Prot
Match: RLA1_DROME (60S acidic ribosomal protein P1 OS=Drosophila melanogaster GN=RpLP1 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.702e-12
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = -3
Query:  390 LACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMN 557
            LAC YA LIL DD +A+T +KI  ++KAANV +E YWP LFAK LE  N+ DLI N
Sbjct:    7 LACVYASLILVDDDVAVTGEKINTILKAANVEVEPYWPGLFAKALEGINVKDLITN 62          
BLAST of CB305083 vs. ExPASy Swiss-Prot
Match: RLA1_MOUSE (60S acidic ribosomal protein P1 OS=Mus musculus GN=Rplp1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.247e-12
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = -3
Query:  390 LACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMN 557
            LAC Y+ LILHDD + +T DKI  L+KAA VS+E +WP LFAK L   N+  LI N
Sbjct:    7 LACIYSALILHDDEVTVTEDKINALIKAAGVSVEPFWPGLFAKALANVNIGSLICN 62          
BLAST of CB305083 vs. ExPASy Swiss-Prot
Match: RLA1_RAT (60S acidic ribosomal protein P1 OS=Rattus norvegicus GN=Rplp1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.837e-11
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = -3
Query:  390 LACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMN 557
            LAC Y+ LILHDD + +T DKI  L+KAA V++E +WP LFAK L   N+  LI N
Sbjct:    7 LACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICN 62          
BLAST of CB305083 vs. ExPASy Swiss-Prot
Match: RLA1_HUMAN (60S acidic ribosomal protein P1 OS=Homo sapiens GN=RPLP1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.837e-11
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = -3
Query:  390 LACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLIMN 557
            LAC Y+ LILHDD + +T DKI  L+KAA V++E +WP LFAK L   N+  LI N
Sbjct:    7 LACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICN 62          
BLAST of CB305083 vs. ExPASy Swiss-Prot
Match: RLA1_CAEEL (60S acidic ribosomal protein P1 OS=Caenorhabditis elegans GN=rla-1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.837e-11
Identity = 34/54 (62.96%), Postives = 40/54 (74.07%), Query Frame = -3
Query:  396 LACTYACLILHDDGIAITTDKIAQLVKAANVSIESYWPSLFAKLLEKRNLDDLI 557
            LAC YA LIL DD +AIT +KIA L+KAANV  E YWP LFAK LE  ++ +LI
Sbjct:    7 LACVYAALILQDDEVAITGEKIATLLKAANVEFEPYWPGLFAKALEGVDVKNLI 60          
The following BLAST results are available for this feature:
BLAST of CB305083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RLA1_MAIZE1.006e-1773.2160S acidic ribosomal protein P1 OS=Zea mays GN=RPP... [more]
RLA11_ARATH1.716e-1776.7960S acidic ribosomal protein P1-1 OS=Arabidopsis t... [more]
RLA13_ARATH3.822e-1775.0060S acidic ribosomal protein P1-3 OS=Arabidopsis t... [more]
RLA12_ARATH3.822e-1775.0060S acidic ribosomal protein P1-2 OS=Arabidopsis t... [more]
RLA1_CHLRE6.102e-1564.2960S acidic ribosomal protein P1 OS=Chlamydomonas r... [more]
RLA1_DROME3.702e-1260.7160S acidic ribosomal protein P1 OS=Drosophila mela... [more]
RLA1_MOUSE8.247e-1257.1460S acidic ribosomal protein P1 OS=Mus musculus GN... [more]
RLA1_RAT1.837e-1155.3660S acidic ribosomal protein P1 OS=Rattus norvegic... [more]
RLA1_HUMAN1.837e-1155.3660S acidic ribosomal protein P1 OS=Homo sapiens GN... [more]
RLA1_CAEEL1.837e-1162.9660S acidic ribosomal protein P1 OS=Caenorhabditis ... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_H01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_H01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305083 ID=CB305083; Name=CB305083; organism=Citrus sinensis; type=EST; length=559bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAATTGATCCACAATAC
TTGTATACATCCAGAATCTCGAACACACAATGCAGAACCAAAGCAACTAC
TTAACACTTTCTGTTCACTCAAGGTTACCTATACTTCAAATCTTAACAAA
CAAAGATAGATACTACTAATAGGTCAAAAAGACAATTAATCTCAAGAGTT
GTAAACCAGCACCAGACCAAATCATTCTGAAAGGAGCTCCTAATCAAACA
AGCTGAAGCCCATATCTTCGTCACTTTCCTCCTTGGGTTCTTCCTTCTTC
TCCTCCGGGGGGGGAGCAGCAGCATCAGCCCCAGCACCTCCAGCAGGAGT
TGCAACAGCAACTGCACCACCGCCACCACCAGACCCCACATTCATTATAA
GATCATCTAAGTTCCGCTTCTCTAAGAGCTTAGCAAACAAACTGGGCCAG
TAAGATTCAATAGACACGTTGGCAGCCTTCACCAGTTGTGCAATCTTATC
CGTAGTAATGGCGATGCCGTCATCGTGGAGGATCAAACAGGCATAAGTAC
AAGCAAGCT
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