CB305087

Overview
NameCB305087
Unique NameCB305087
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB305087 vs. ExPASy Swiss-Prot
Match: QORH_ARATH (Putative quinone-oxidoreductase homolog, chloroplastic OS=Arabidopsis thaliana GN=At4g13010 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 6.916e-49
Identity = 83/115 (72.17%), Postives = 94/115 (81.74%), Query Frame = -1
Query:  194 KSPSGRKYDAVINCVTGIPWSTFEPNLGTTGKVIDFNPSPRVLLTFAWKKLTFSKKQLVPLSVSPKGENLDFLVKLVKEGKLKTVIDSKHSLSKAEDAWAKSISGRATGKIIVEP 538
            KSPSG+KYDAV++C  GIP+S FEPNL   GKVID  P P  + T+A KK+T SKKQLVPL + PK ENL+F+V LVKEGK+KTVIDSKH LSKAEDAWAKSI G ATGKIIVEP
Sbjct:  215 KSPSGKKYDAVVHCANGIPFSVFEPNLSENGKVIDITPGPNAMWTYAVKKITMSKKQLVPLLLIPKAENLEFMVNLVKEGKVKTVIDSKHPLSKAEDAWAKSIDGHATGKIIVEP 329          

HSP 2 Score: 42.3578 bits (98), Expect = 6.916e-49
Identity = 19/21 (90.48%), Postives = 21/21 (100.00%), Query Frame = -2
Query:  535 VKSLGADEVLDYKTPDGAALR 597
            VKSLGADEVLDYKTP+GAAL+
Sbjct:  195 VKSLGADEVLDYKTPEGAALK 215          
BLAST of CB305087 vs. ExPASy Swiss-Prot
Match: QORH_SPIOL (Quinone-oxidoreductase homolog, chloroplastic OS=Spinacia oleracea GN=QOR PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.501e-45
Identity = 79/121 (65.29%), Postives = 93/121 (76.86%), Query Frame = -1
Query:  194 P*WGSSKSPSGRKYDAVINCVTGIPWSTFEPNLGTTGKVIDFNPSPRVLLTFAWKKLTFSKKQLVPLSVSPKGENLDFLVKLVKEGKLKTVIDSKHSLSKAEDAWAKSISGRATGKIIVEP 556
            P   S  SPSG+KYD V++  +GIPWSTFEPNL   GKVID  P P  ++TFAWKKLTFSKKQLVPL + PK  N +++V LVKE KLKTVIDSKH LSK EDAW++ + G ATGKII+EP
Sbjct:  209 PEGASLTSPSGKKYDYVVHGASGIPWSTFEPNLSEAGKVIDLTPGPTAMMTFAWKKLTFSKKQLVPLLLIPKIPNFEYVVNLVKEKKLKTVIDSKHPLSKGEDAWSRIMGGHATGKIIIEP 329          

HSP 2 Score: 38.891 bits (89), Expect = 1.501e-45
Identity = 17/20 (85.00%), Postives = 19/20 (95.00%), Query Frame = -2
Query:  538 VKSLGADEVLDYKTPDGAAL 597
            VK LGADEVLDYKTP+GA+L
Sbjct:  195 VKGLGADEVLDYKTPEGASL 214          
The following BLAST results are available for this feature:
BLAST of CB305087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
QORH_ARATH6.916e-4972.17Putative quinone-oxidoreductase homolog, chloropla... [more]
QORH_SPIOL1.501e-4565.29Quinone-oxidoreductase homolog, chloroplastic OS=S... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_H06 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_H06 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305087 ID=CB305087; Name=CB305087; organism=Citrus sinensis; type=EST; length=604bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTACCAACAAGCCCATCTA
TCATTTGTTCAGCACAATGGATATATATTACAGTATCCGGTTGAAAGAAA
ATTGCAAAATGAAACACCACAACATCAGAGCCGAGCCTTTGTCCTACATT
ATACATTCGATTACAGCAATAACAATCAAATCTTATGAACTTATGGCTCT
ACAATGATCTTCCCAGTAGCACGACCACTGATACTCTTAGCCCAAGCATC
TTCAGCCTTGCTGAGGGAATGCTTCGAATCAATTACTGTCTTAAGCTTTC
CTTCCTTCACTAACTTGACAAGAAAATCTAGGTTCTCACCTTTAGGACTC
ACGGAGAGTGGTACCAGCTGCTTTTTGGAGAAGGTAAGTTTCTTCCAAGC
AAAAGTCAGCAGGACACGGGGGCTAGGATTGAAATCTATCACCTTCCCAG
TTGTGCCCAGATTCGGCTCAAAAGTAGACCAGGGAATACCTGTTACACAG
TTTATCACTGCATCATATTTCCGACCAGATGGACTCTTAGAGCTGCCCCA
TCAGGGGTCTTGTAATCAAGAACCTCATCAGCCCCTAAACTCTTGACAAG
TCAA
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