CB305091

Overview
NameCB305091
Unique NameCB305091
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length524
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5958 contig Csv1_Contig5958:196..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CB305091 vs. ExPASy Swiss-Prot
Match: TXD17_DANRE (Thioredoxin domain-containing protein 17 OS=Danio rerio GN=txndc17 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.207e-12
Identity = 36/80 (45.00%), Postives = 45/80 (56.25%), Query Frame = -2 
Query:  281 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRW 520
            K K  F  F  DKD     SWCPDCV+AEPV+   L   P+    +   VGDRP W++  + F+     KLTGVPTL R+
Sbjct:   23 KGKEIFAYFSGDKDEHGK-SWCPDCVKAEPVVRAELPHLPEGTVFIYCQVGDRPYWKDSNNDFK--KTLKLTGVPTLLRY 99
[Close]
BLAST of CB305091 vs. ExPASy Swiss-Prot
Match: TXD17_MOUSE (Thioredoxin domain-containing protein 17 OS=Mus musculus GN=Txndc17 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.088e-11
Identity = 33/80 (41.25%), Postives = 47/80 (58.75%), Query Frame = -2 
Query:  281 KNKANFILFLADKDPSTSLSWCPDCVRAEPVIYKTLEASPDDIALLQAYVGDRPTWRNPQHPFRVNSRFKLTGVPTLFRW 520
            + K  F  F   KD +   SWCPDCV AEPVI + L+   +D   +   VGD+P W++P + FR   + K+T VPTL ++
Sbjct:   23 EGKTIFAYFSGSKD-TEGKSWCPDCVEAEPVIREGLKHVTEDCVFIYCQVGDKPYWKDPNNDFR--QKLKITAVPTLLKY 99
The following BLAST results are available for this feature:
BLAST of CB305091 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TXD17_DANRE4.207e-1245.00Thioredoxin domain-containing protein 17 OS=Danio ... [more]
TXD17_MOUSE2.088e-1141.25Thioredoxin domain-containing protein 17 OS=Mus mu... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IVaR_H11 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IVaR_H11 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305091 ID=CB305091; Name=CB305091; organism=Citrus sinensis; type=EST; length=524bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAAAATGCAATGTCATCAGT
AGACACTTTATTTCATTGGCCACTGAAGGGCAACGTCGCTAGCCAGCATT
AGTAACATGCATATAAAACCAGCAAAAATGCCAAGATAGATTGAAACCAA
CCATATAGGATTCTTGTGCATCCTACAAATGGGAAACCATCAGAACTTAA
TCGGCAGAAAGAAGGGCTTTGATTTTGTGCTCGAGATGGGCTTCATGGTC
TTCAAGACGGCCGCTGACTATGTCATTTTCCCAGCGGAAGAGTGTCGGAA
CTCCCGTCAGTTTGAACCTTGAATTAACCCTGAATGGGTGCTGAGGATTC
CTCCATGTTGGTCTATCCCCAACATAAGCCTGCAGCAGTGCGATGTCATC
TGGTGAAGCTTCCAGGGTTTTGTAGATTACAGGTTCAGCTCTCACGCAAT
CAGGGCACCAGCTGAGAGAAGTAGAGGGATCTTTGTCCGCGAGAAAAAGA
ATGAAATTGGCTTTATTTTTGGGC
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