CB305119

Overview
NameCB305119
Unique NameCB305119
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:978..1632. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305119 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.362e-35
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = -1
Query:  431 REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADFAETAD 655
            REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAAD AETAD
Sbjct:  281 REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 355          
BLAST of CB305119 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.551e-32
Identity = 68/75 (90.67%), Postives = 72/75 (96.00%), Query Frame = -1
Query:  431 REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADFAETAD 655
            RE+VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG PNALDG+YVGG+HPELILAAAD AE AD
Sbjct:  277 REIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGLPNALDGSYVGGIHPELILAAADSAEIAD 351          
BLAST of CB305119 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.041e-28
Identity = 63/75 (84.00%), Postives = 67/75 (89.33%), Query Frame = -1
Query:  431 REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADFAETAD 655
            REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKA  LALK+LG PNA+DGT VG + PEL+LAAAD AET D
Sbjct:  274 REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGTLVGNLSPELVLAAADSAETVD 348          
BLAST of CB305119 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.717e-24
Identity = 55/69 (79.71%), Postives = 61/69 (88.41%), Query Frame = -1
Query:  449 REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAAD 655
            REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT    +  EL++A  D
Sbjct:  280 REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGTMSPPLREELMIAYKD 348          
BLAST of CB305119 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.114e-22
Identity = 56/73 (76.71%), Postives = 63/73 (86.30%), Query Frame = -1
Query:  449 REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHP----ELILAAAD 655
            REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT +  V P    E ++A+ D
Sbjct:  277 REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGT-IPEVSPALREEFVIASKD 348          
BLAST of CB305119 vs. ExPASy Swiss-Prot
Match: THI4_UROFA (Thiazole biosynthetic enzyme, mitochondrial OS=Uromyces fabae GN=THI2 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.776e-12
Identity = 32/57 (56.14%), Postives = 46/57 (80.70%), Query Frame = -1
Query:  485 REVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVG 655
            RE++PG+IV GME++E DG+ RMGPTFGAM++SG++AA +AL+SL +    +G  VG
Sbjct:  279 REILPGLIVGGMELSEFDGSARMGPTFGAMLLSGKRAAEVALQSLDRVKIEEGEVVG 335          
The following BLAST results are available for this feature:
BLAST of CB305119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
THI4_CITSI4.362e-3598.67Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL1.551e-3290.67Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH1.041e-2884.00Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI41_MAIZE7.717e-2479.71Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE1.114e-2276.71Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI4_UROFA6.776e-1256.14Thiazole biosynthetic enzyme, mitochondrial OS=Uro... [more]
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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_D09 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_D09 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305119 ID=CB305119; Name=CB305119; organism=Citrus sinensis; type=EST; length=655bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCAACAAAAACAGAGTAAGCT
CAGATCTTCATCATTGATCTTAATCACATCAGCACTGTCCCATTGGCTGA
TGCCTCAAGTTATAAACATACAAAGCAAAGAAAAGGGAACAGCCCAAGGG
CAGTCTTACACATAATACAGATAACAAGGACTAAATACGCAACTGCAAAT
TCACCCCCGAAAAACTCACAACGGTTTCTTACAAGAGGAGAAAGAAATTA
AAATTAAAGGTTGCATGATGGACCGGAAACAAACACTTTATTCACAAAAC
CTCACAACATCATCTCATTATTCGCATCAACCATCCATCACAACCACCTA
AATACAACTACTTTTTTGCCAGAGTTTATTTGCATGCACACAGCTGATGA
GTGATGATGCCTGTTATTATCAAATTAACCATCAGCAGTCTCAGCAAAAT
CAGCTGCAGCTAAAATCAGCTCAGGGTGAACACCTCCCACATATGTACCG
TCTAATGCATTCGGCTGGCCCAGTGACTTCAACGCCAAATGCGCAGCCTT
CTGCCCCGATATCATCATTGCTCCAAATGTTGGCCCCATTCTAGGAGCAC
CATCAATCTCGGCAACTTCCATGCCGGTAACTATCATACCAGGCACAACC
TCCCT
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