CB305139

Overview
NameCB305139
Unique NameCB305139
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length264
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10229 contig Csv1_Contig10229:669..931. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB305139 vs. ExPASy Swiss-Prot
Match: PSBP_PEA (Oxygen-evolving enhancer protein 2, chloroplastic OS=Pisum sativum GN=PSBP PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.623e-21
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = -1
Query:  112 ADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVESTASSFSVA 264
            ADGDEGGKHQLITATVK GKLYICKAQAGDKRWFKGARK+VE TASSFSVA
Sbjct:  209 ADGDEGGKHQLITATVKDGKLYICKAQAGDKRWFKGARKFVEDTASSFSVA 259          
BLAST of CB305139 vs. ExPASy Swiss-Prot
Match: PSBP1_ARATH (Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Arabidopsis thaliana GN=PSBP1 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 2.769e-21
Identity = 47/51 (92.16%), Postives = 49/51 (96.08%), Query Frame = -1
Query:  112 ADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVESTASSFSVA 264
            ADGDEGGKHQLITATV GGKLYICKAQAGDKRWFKGARK+VES A+SFSVA
Sbjct:  213 ADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGARKFVESAATSFSVA 263          
BLAST of CB305139 vs. ExPASy Swiss-Prot
Match: PSBP2_ARATH (Putative oxygen-evolving enhancer protein 2-2 OS=Arabidopsis thaliana GN=PSBP2 PE=5 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 6.169e-21
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = -1
Query:  112 ADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVESTASSFSVA 264
            ADGDEGGKHQLITATV GGKLYICKAQAGDKRWFKGARK+VE+ A+SFSVA
Sbjct:   75 ADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGARKFVENAATSFSVA 125          
BLAST of CB305139 vs. ExPASy Swiss-Prot
Match: PSBP1_TOBAC (Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Nicotiana tabacum GN=PSBP1 PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.795e-20
Identity = 45/51 (88.24%), Postives = 49/51 (96.08%), Query Frame = -1
Query:  112 ADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVESTASSFSVA 264
            ADGDEGGKHQLI+ATV GGKLYICKAQAGDKRWFKGARK+VE+ A+SFSVA
Sbjct:  218 ADGDEGGKHQLISATVNGGKLYICKAQAGDKRWFKGARKFVENAATSFSVA 268          
BLAST of CB305139 vs. ExPASy Swiss-Prot
Match: PSBP_CUCSA (Oxygen-evolving enhancer protein 2, chloroplastic OS=Cucumis sativus GN=PSBP PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.344e-20
Identity = 46/51 (90.20%), Postives = 47/51 (92.16%), Query Frame = -1
Query:  112 ADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVESTASSFSVA 264
            ADGDEGGKHQLITATV  GKLYICKAQAGDKRWFKGARK+VE  ASSFSVA
Sbjct:  213 ADGDEGGKHQLITATVNDGKLYICKAQAGDKRWFKGARKFVEGAASSFSVA 263          
BLAST of CB305139 vs. ExPASy Swiss-Prot
Match: PSBP_SINAL (Oxygen-evolving enhancer protein 2, chloroplastic OS=Sinapis alba GN=PSBP PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.061e-20
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = -1
Query:  112 ADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVESTASSFSVA 264
            ADGDEGGKHQLITATV GGKLYICKAQAGDKRWFKGA K+VE  A+SFSVA
Sbjct:  210 ADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGANKFVEKAATSFSVA 260          
BLAST of CB305139 vs. ExPASy Swiss-Prot
Match: PSBP_SPIOL (Oxygen-evolving enhancer protein 2, chloroplastic OS=Spinacia oleracea GN=PSBP PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.163e-19
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = -1
Query:  112 ADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVESTASSFSVA 264
            ADGDEGGKHQ+I ATVK GKLYICKAQAGDKRWFKGA+K+VES  SSFSVA
Sbjct:  217 ADGDEGGKHQVIAATVKDGKLYICKAQAGDKRWFKGAKKFVESATSSFSVA 267          
BLAST of CB305139 vs. ExPASy Swiss-Prot
Match: PSBP_SOLTU (Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum tuberosum GN=PSBP PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.163e-19
Identity = 43/51 (84.31%), Postives = 48/51 (94.12%), Query Frame = -1
Query:  112 ADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVESTASSFSVA 264
            ADGDEGGKHQLITATV  GKLYICKAQAGDKRWFKGA+K+VE+ A+SFS+A
Sbjct:  210 ADGDEGGKHQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENAATSFSIA 260          
BLAST of CB305139 vs. ExPASy Swiss-Prot
Match: PSBP_SOLLC (Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum lycopersicum GN=PSBP PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.163e-19
Identity = 43/51 (84.31%), Postives = 48/51 (94.12%), Query Frame = -1
Query:  112 ADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVESTASSFSVA 264
            ADGDEGGKHQLITATV  GKLYICKAQAGDKRWFKGA+K+VE+ A+SFS+A
Sbjct:  208 ADGDEGGKHQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENAATSFSIA 258          
BLAST of CB305139 vs. ExPASy Swiss-Prot
Match: PSBP2_TOBAC (Oxygen-evolving enhancer protein 2-2, chloroplastic OS=Nicotiana tabacum GN=PSBP2 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.984e-19
Identity = 43/51 (84.31%), Postives = 49/51 (96.08%), Query Frame = -1
Query:  112 ADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGARKYVESTASSFSVA 264
            ADG+EGGKHQLITATV  GKLYICKAQAGDKRWFKGA+K+VE+TA+SFS+A
Sbjct:  215 ADGNEGGKHQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 265          
The following BLAST results are available for this feature:
BLAST of CB305139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PSBP_PEA1.623e-2194.12Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP1_ARATH2.769e-2192.16Oxygen-evolving enhancer protein 2-1, chloroplasti... [more]
PSBP2_ARATH6.169e-2190.20Putative oxygen-evolving enhancer protein 2-2 OS=A... [more]
PSBP1_TOBAC1.795e-2088.24Oxygen-evolving enhancer protein 2-1, chloroplasti... [more]
PSBP_CUCSA2.344e-2090.20Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_SINAL3.061e-2088.24Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_SPIOL1.163e-1986.27Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_SOLTU1.163e-1984.31Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_SOLLC1.163e-1984.31Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP2_TOBAC1.984e-1984.31Oxygen-evolving enhancer protein 2-2, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionFLAVEDO0003_IaR_G01 Flavedo Mature Citrus sinensis cDNA clone FLAVEDO0003_IaR_G01 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB305139 ID=CB305139; Name=CB305139; organism=Citrus sinensis; type=EST; length=264bp
TTTTTTTTTTTTTTGTTTTTTTTTTTTTTTGGGGAAAGATGGGAGTAGAT
AATTCAAGACAAACAGCATACATTAAGTTGGATTTACATAAAAATTCTGA
TTAATGTCTCAAGCAACACTGAAAGAACTGGCAGTGCTTTCCACATACTT
TCTTGCTCCCTTAAACCACCTCTTGTCTCCAGCTTGTGCCTTGCAGATGT
AAAGCTTGCCACCTTTAACCGTGGCTGTAATTAGTTGATGCTTGCCACCT
TCATCTCCATCAGC
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