CB322132

Overview
NameCB322132
Unique NameCB322132
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length311
Libraries
Library NameType
Mature leaf blade cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB322132 vs. ExPASy Swiss-Prot
Match: BRR2_SCHPO (Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyces pombe GN=brr2 PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 3.197e-46
Identity = 87/103 (84.47%), Postives = 97/103 (94.17%), Query Frame = 2
Query:    2 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGT 310
            QVLVSTATLAWGVNLPAHTVIIKGTQ+Y+PEKG WTELSP D++QMLGRAGRPQ+D+YGEGIIIT HSEL+YYLSLMNQQLPIESQF+ +LAD LNAE+ LGT
Sbjct:  846 QVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGIWTELSPQDVLQMLGRAGRPQFDTYGEGIIITAHSELQYYLSLMNQQLPIESQFMRRLADCLNAEVSLGT 948          
BLAST of CB322132 vs. ExPASy Swiss-Prot
Match: U520_DROME (Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4)

HSP 1 Score: 182.956 bits (463), Expect = 4.175e-46
Identity = 87/103 (84.47%), Postives = 96/103 (93.20%), Query Frame = 2
Query:    2 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGT 310
            QVLVSTATLAWGVNLPAHTVIIKGTQ+YNPEKG W ELS LD++QMLGRAGRPQYD+ GEGI+IT HSEL++YLSL+NQQLPIESQF+SKL D LNAEIVLGT
Sbjct:  807 QVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGRWVELSALDVLQMLGRAGRPQYDTKGEGILITNHSELQFYLSLLNQQLPIESQFISKLPDMLNAEIVLGT 909          

HSP 2 Score: 77.411 bits (189), Expect = 2.470e-14
Identity = 37/103 (35.92%), Postives = 61/103 (59.22%), Query Frame = 2
Query:    2 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGT 310
            QV V +  L WG+++ AH VII  TQ YN +  ++ +    D++QM+GRA RP  D+  + +++   S+  ++   +N+ LPIES    ++ D  NAE+V  T
Sbjct: 1641 QVAVISRDLCWGMSISAHLVIIMDTQFYNGKNHSYEDYPITDVLQMIGRANRPNEDADAKCVLMCQSSKKDFFKKFINEPLPIESHLDHRMHDHFNAEVVTKT 1743          
BLAST of CB322132 vs. ExPASy Swiss-Prot
Match: U520_CAEEL (Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 7.121e-46
Identity = 88/103 (85.44%), Postives = 93/103 (90.29%), Query Frame = 2
Query:    2 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGT 310
            QVL STATLAWGVNLPAHTVIIKGTQIYNPEKG WTEL  LDIMQMLGRAGRPQYD  GEGI+IT HSEL+YYLSLMNQQLP+ESQ VS+L D LNAE+VLGT
Sbjct:  800 QVLFSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWTELGALDIMQMLGRAGRPQYDDRGEGILITNHSELQYYLSLMNQQLPVESQMVSRLTDMLNAEVVLGT 902          
BLAST of CB322132 vs. ExPASy Swiss-Prot
Match: U520_HUMAN (U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 1.343e-44
Identity = 86/102 (84.31%), Postives = 93/102 (91.18%), Query Frame = 2
Query:    2 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLG 307
            QVLVSTATLAWGVNLPAHTVIIKGTQ+Y+PEKG WTEL  LDI+QMLGRAGRPQYD+ GEGI+IT H EL+YYLSL+NQQLPIESQ VSKL D LNAEIVLG
Sbjct:  807 QVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLG 908          

HSP 2 Score: 76.6406 bits (187), Expect = 4.214e-14
Identity = 39/103 (37.86%), Postives = 60/103 (58.25%), Query Frame = 2
Query:    2 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGT 310
            QV+V++ +L WG+N+ AH VII  TQ YN +  A+ +    D++QM+G A RP  D  G  +I+   S+  ++   + + LP+ES     + D  NAEIV  T
Sbjct: 1642 QVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKT 1744          
BLAST of CB322132 vs. ExPASy Swiss-Prot
Match: BRR2_YEAST (Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces cerevisiae GN=BRR2 PE=1 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 8.148e-42
Identity = 78/102 (76.47%), Postives = 92/102 (90.20%), Query Frame = 2
Query:    2 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLG 307
            QVLV TATLAWGVNLPAHTVIIKGT +Y+PEKG+W +LSP D++QMLGRAGRP+YD++GEGIIIT  S ++YYLS++NQQLPIESQFVSKL D LNAE+V G
Sbjct:  826 QVLVCTATLAWGVNLPAHTVIIKGTDVYSPEKGSWEQLSPQDVLQMLGRAGRPRYDTFGEGIIITDQSNVQYYLSVLNQQLPIESQFVSKLVDNLNAEVVAG 927          
BLAST of CB322132 vs. ExPASy Swiss-Prot
Match: HELCL_DICDI (Activating signal cointegrator 1 complex subunit 3-like OS=Dictyostelium discoideum GN=ascc3l PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.177e-40
Identity = 81/103 (78.64%), Postives = 91/103 (88.35%), Query Frame = 2
Query:    2 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGT 310
            QVL+STATLAWGVNLPAHTVIIKGTQIYNPEKG W ELSPLD+ QMLGRAGRP +D  GEGIIIT   EL++YLSL+N QL IESQF+S++AD LNAEIVLG+
Sbjct:  877 QVLISTATLAWGVNLPAHTVIIKGTQIYNPEKG-WCELSPLDVTQMLGRAGRPPFDKEGEGIIITSQHELQFYLSLLNTQLSIESQFISRIADNLNAEIVLGS 978          
BLAST of CB322132 vs. ExPASy Swiss-Prot
Match: HELC1_HUMAN (Activating signal cointegrator 1 complex subunit 3 OS=Homo sapiens GN=ASCC3 PE=1 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 1.260e-34
Identity = 69/103 (66.99%), Postives = 85/103 (82.52%), Query Frame = 2
Query:    2 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGT 310
            +VLV TATLAWGVNLPAH VIIKGTQIY  ++G++ +L  LD+MQ+ GRAGRPQ+D +GEGIIIT H +L +YL+L+ Q+ PIESQF+  LAD LNAEI LGT
Sbjct:  804 KVLVCTATLAWGVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLTLLTQRNPIESQFLESLADNLNAEIALGT 906          

HSP 2 Score: 103.605 bits (257), Expect = 3.219e-22
Identity = 47/103 (45.63%), Postives = 69/103 (66.99%), Query Frame = 2
Query:    2 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGT 310
            QVL++T+TLAWGVN PAH VIIKGT+ Y+ +   + +    D++QM+GRAGRPQ+D  G+ +I+    +  +Y   + +  P+ES  +  L+D LNAEI  GT
Sbjct: 1641 QVLIATSTLAWGVNFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFYKKFLYEPFPVESSLLGVLSDHLNAEIAGGT 1743          
BLAST of CB322132 vs. ExPASy Swiss-Prot
Match: HELC1_DICDI (Activating signal cointegrator 1 complex subunit 3 OS=Dictyostelium discoideum GN=ascc3 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.294e-33
Identity = 65/103 (63.11%), Postives = 83/103 (80.58%), Query Frame = 2
Query:    2 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGT 310
            +VLV TATLAWGVNLPAHTVIIKGTQ+YN + G + +L   D+MQ+ GRAGRPQ+D+ GEG ++T   +L +YLSLM+  +PIES+F++ L D LNAEIVLGT
Sbjct:  806 KVLVCTATLAWGVNLPAHTVIIKGTQVYNAKNGGFMDLGISDVMQIFGRAGRPQFDTSGEGFLLTSKDKLDHYLSLMSSSMPIESKFITNLEDHLNAEIVLGT 908          

HSP 2 Score: 103.219 bits (256), Expect = 4.204e-22
Identity = 47/103 (45.63%), Postives = 69/103 (66.99%), Query Frame = 2
Query:    2 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGT 310
            Q+L+ST+TLAWGVNLPAH VIIKGT+ ++ +   + +    D++QM+GRAGRPQ+D  G+ +++    + ++Y   +    P+ES     L D LNAEIV GT
Sbjct: 1640 QILISTSTLAWGVNLPAHLVIIKGTEYFDGKTKRYVDFPLTDVLQMIGRAGRPQFDKEGKAMVMVHEPKKQFYKKFLYDPFPVESHLKDFLHDHLNAEIVSGT 1742          
BLAST of CB322132 vs. ExPASy Swiss-Prot
Match: MUG81_SCHPO (Putative helicase mug81 OS=Schizosaccharomyces pombe GN=mug81 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.478e-30
Identity = 58/103 (56.31%), Postives = 81/103 (78.64%), Query Frame = 2
Query:    2 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGT 310
            ++L  TATLAWGVNLPA+ V+IKGTQ+Y+P+KG++ +L  LD++Q+ GRAGRPQ++S     IIT H +L +Y+S++ QQ PIES+F  +L D LNAE+ LGT
Sbjct:  613 KILCCTATLAWGVNLPAYAVLIKGTQLYDPQKGSFVDLGVLDVLQIFGRAGRPQFESSAVAYIITTHDKLSHYISVVTQQSPIESRFTDRLVDNLNAEVSLGT 715          

HSP 2 Score: 98.9821 bits (245), Expect = 7.928e-21
Identity = 46/103 (44.66%), Postives = 67/103 (65.05%), Query Frame = 2
Query:    2 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGT 310
            Q+L++T+TLAWGVN PAH VI+KGT+ Y+ + G + ++   D++QMLGRAGRPQ+D+ G   I     +  +Y   ++   P+ES     L + LNAEI  GT
Sbjct: 1448 QILIATSTLAWGVNTPAHLVIVKGTEYYDAKIGGYKDMDLTDVLQMLGRAGRPQFDNSGVARIFVQDIKKSFYKHFLHSGFPVESYLHKVLDNHLNAEIATGT 1550          
BLAST of CB322132 vs. ExPASy Swiss-Prot
Match: SLH1_YEAST (Antiviral helicase SLH1 OS=Saccharomyces cerevisiae GN=SLH1 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.824e-25
Identity = 59/104 (56.73%), Postives = 76/104 (73.08%), Query Frame = 2
Query:    2 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDS-YGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGT 310
            +VL  TATLAWGVNLPA  VIIKGTQ+Y+ +KG + +L   D++Q+ GR GRP + S  G GI+ T +  L +Y+SL+ QQ PIES+F SKL D LNAEI LG+
Sbjct:  620 KVLCCTATLAWGVNLPADCVIIKGTQVYDSKKGGFIDLGISDVIQIFGRGGRPGFGSANGTGILCTSNDRLDHYVSLITQQHPIESRFGSKLVDNLNAEISLGS 723          

HSP 2 Score: 103.219 bits (256), Expect = 4.204e-22
Identity = 49/103 (47.57%), Postives = 68/103 (66.02%), Query Frame = 2
Query:    2 QVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDIMQMLGRAGRPQYDSYGEGIIITGHSELRYYLSLMNQQLPIESQFVSKLADQLNAEIVLGT 310
            Q+L++T+TLAWGVNLPAH VIIKGTQ ++ +   + ++   DI+QM+GRAGRP YD+ G  I+ T  S+  +Y   +N   P+ES     L D L AEI  G+
Sbjct: 1456 QILIATSTLAWGVNLPAHLVIIKGTQFFDAKIEGYRDMDLTDILQMMGRAGRPAYDTTGTAIVYTKESKKMFYKHFLNVGFPVESSLHKVLDDHLGAEITSGS 1558          
The following BLAST results are available for this feature:
BLAST of CB322132 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
BRR2_SCHPO3.197e-4684.47Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyc... [more]
U520_DROME4.175e-4684.47Putative U5 small nuclear ribonucleoprotein 200 kD... [more]
U520_CAEEL7.121e-4685.44Putative U5 small nuclear ribonucleoprotein 200 kD... [more]
U520_HUMAN1.343e-4484.31U5 small nuclear ribonucleoprotein 200 kDa helicas... [more]
BRR2_YEAST8.148e-4276.47Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces c... [more]
HELCL_DICDI1.177e-4078.64Activating signal cointegrator 1 complex subunit 3... [more]
HELC1_HUMAN1.260e-3466.99Activating signal cointegrator 1 complex subunit 3... [more]
HELC1_DICDI5.294e-3363.11Activating signal cointegrator 1 complex subunit 3... [more]
MUG81_SCHPO5.478e-3056.31Putative helicase mug81 OS=Schizosaccharomyces pom... [more]
SLH1_YEAST1.824e-2556.73Antiviral helicase SLH1 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionEST0245 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB160 similar to U5 small nuclear ribonucleoprotein helicase (acc# NP_173520), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB322132 ID=CB322132; Name=CB322132; organism=Citrus sinensis; type=EST; length=311bp
ACAGGTATTGGTTTCCACTGCAACCCTTGCTTGGGGAGTGAACTTGCCTG
CTCACACTGTGATCATCAAAGGAACTCAGATTTACAATCCAGAGAAAGGG
GCATGGACAGAGCTCAGTCCTCTGGATATCATGCAGATGCTTGGTCGTGC
TGGAAGGCCTCAGTATGATTCATATGGGGAAGGGATTATCATTACTGGTC
ACTCTGAACTTCGCTACTATCTTTCTTTGATGAATCAGCAGCTCCCTATT
GAAAGTCAGTTTGTGTCCAAGCTGGCTGATCAGTTGAATGCAGAAATTGT
CCTTGGAACTG
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