CB322135 | Citrus Genome Database

Overview


Name	CB322135
Unique Name	CB322135
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	594

Libraries


Library Name	Type
Mature leaf blade cDNA subtraction library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_CITSI (Photosystem Q(B) protein OS=Citrus sinensis GN=psbA PE=3 SV=1)

HSP 1 Score: 333.569 bits (854), Expect = 4.566e-91
Identity = 162/177 (91.53%), Postives = 163/177 (92.09%), Query Frame = 2

Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177

[Close]

BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_LOTJA (Photosystem Q(B) protein OS=Lotus japonicus GN=psbA PE=3 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 1.735e-90
Identity = 161/177 (90.96%), Postives = 162/177 (91.53%), Query Frame = 2

Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRESENLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177

[Close]

BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_LOBMA (Photosystem Q(B) protein OS=Lobularia maritima GN=psbA PE=3 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 1.735e-90
Identity = 161/177 (90.96%), Postives = 162/177 (91.53%), Query Frame = 2

Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRESENLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177

[Close]

BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_CUSEX (Photosystem Q(B) protein OS=Cuscuta exaltata GN=psbA PE=3 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 1.735e-90
Identity = 161/177 (90.96%), Postives = 162/177 (91.53%), Query Frame = 2

Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRESENLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177

[Close]

BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_VIGUN (Photosystem Q(B) protein OS=Vigna unguiculata GN=psbA PE=3 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 2.266e-90
Identity = 161/177 (90.96%), Postives = 162/177 (91.53%), Query Frame = 2

Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177

[Close]

BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_TOBAC (Photosystem Q(B) protein OS=Nicotiana tabacum GN=psbA PE=3 SV=2)

HSP 1 Score: 331.257 bits (848), Expect = 2.266e-90
Identity = 161/177 (90.96%), Postives = 162/177 (91.53%), Query Frame = 2

Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177

[Close]

BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_SPIOL (Photosystem Q(B) protein OS=Spinacia oleracea GN=psbA PE=1 SV=2)

HSP 1 Score: 331.257 bits (848), Expect = 2.266e-90
Identity = 161/177 (90.96%), Postives = 162/177 (91.53%), Query Frame = 2

Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177

[Close]

BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_SOYBN (Photosystem Q(B) protein OS=Glycine max GN=psbA PE=3 SV=3)

HSP 1 Score: 331.257 bits (848), Expect = 2.266e-90
Identity = 161/177 (90.96%), Postives = 162/177 (91.53%), Query Frame = 2

Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177

[Close]

BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_SOLTU (Photosystem Q(B) protein OS=Solanum tuberosum GN=psbA PE=3 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 2.266e-90
Identity = 161/177 (90.96%), Postives = 162/177 (91.53%), Query Frame = 2

Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177

[Close]

BLAST of CB322135 vs. ExPASy Swiss-Prot
Match: PSBA_SOLNI (Photosystem Q(B) protein OS=Solanum nigrum GN=psbA PE=1 SV=2)

HSP 1 Score: 331.257 bits (848), Expect = 2.266e-90
Identity = 161/177 (90.96%), Postives = 162/177 (91.53%), Query Frame = 2

Query:   62 MTAILERRESERLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIXXXXXXXXXXXXXXFLIYPIGQGSFSDGVPLGIS 592
            MTAILERRESE LWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWI              FLIYPIGQGSFSDG+PLGIS
Sbjct:    1 MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGIS 177

The following BLAST results are available for this feature:

BLAST of CB322135 vs. ExPASy Swiss-Prot

BLAST of CB322135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227


Match Name	E-value	Identity	Description
PSBA_CITSI	4.566e-91	91.53	Photosystem Q(B) protein OS=Citrus sinensis GN=psb...	[more]
PSBA_LOTJA	1.735e-90	90.96	Photosystem Q(B) protein OS=Lotus japonicus GN=psb...	[more]
PSBA_LOBMA	1.735e-90	90.96	Photosystem Q(B) protein OS=Lobularia maritima GN=...	[more]
PSBA_CUSEX	1.735e-90	90.96	Photosystem Q(B) protein OS=Cuscuta exaltata GN=ps...	[more]
PSBA_VIGUN	2.266e-90	90.96	Photosystem Q(B) protein OS=Vigna unguiculata GN=p...	[more]
PSBA_TOBAC	2.266e-90	90.96	Photosystem Q(B) protein OS=Nicotiana tabacum GN=p...	[more]
PSBA_SPIOL	2.266e-90	90.96	Photosystem Q(B) protein OS=Spinacia oleracea GN=p...	[more]
PSBA_SOYBN	2.266e-90	90.96	Photosystem Q(B) protein OS=Glycine max GN=psbA PE...	[more]
PSBA_SOLTU	2.266e-90	90.96	Photosystem Q(B) protein OS=Solanum tuberosum GN=p...	[more]
PSBA_SOLNI	2.266e-90	90.96	Photosystem Q(B) protein OS=Solanum nigrum GN=psbA...	[more]

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Properties


Property Name	Value
Genbank description	EST0248 Mature leaf blade cDNA subtraction library Citrus sinensis cDNA clone 24LB164 similar to photosystem II protein D1 (acc# NP_084778), mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CB322135 ID=CB322135; Name=CB322135; organism=Citrus sinensis; type=EST; length=594bp
GCTTTTTGCAGAATTTGTATGCTTGGGAGTCCCTGATGATTAAATAAACC
AAGATTTTACCATGACTGCAATTTTAGAGAGACGCGAAAGCGAACGCCTA
TGGGGTCGCTTCTGTAACTGGATAACTAGCACTGAAAACCGCCTTTACAT
TGGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTG
TATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGACGGTATT
CGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATTTCTGG
TGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATAT
GGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAG
CTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGA
GTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCAT
ATTCAGCTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATC
GGTCAAGGAAGTTTTTCTGATGGTGTGCCTCTAGGAATCTCTGG